@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00070: (2016-06-01 )
MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALVEKNEEDENEEEQEEV

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]

-

GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]




GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]




GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]




NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(5CDP)
GYRA_STAAN
[Raw transfer]

-

CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]

-

CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]

-

SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]




NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]

-

SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]




NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]

-

CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]

-

MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]




MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]




NACID_O_8(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_G_6(5CDP)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]

-

NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]

-

NACID_N_14(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_P_16(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]

-

NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]

-

NACID_G_5(4I3H)
?
[Raw transfer]

-

NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]

-

NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]

-

NACID_G_6(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]

-

NACID_G_5(4I3H)
?
[Raw transfer]

-

NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]

-

NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]

-

NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]

-

NACID_I_6(5CDM)
GYRA_STAAN
[Raw transfer]

-

NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]

-

NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]

-

22 PsiBlast_CBE 88.50100% -86 - C8 -4DDQ - GYRA_BACSU -
21 PsiBlast_CBE 88.29100% -87 - C8 -4DDQ - GYRA_BACSU -
1 PsiBlast_PDB 88.23100% -85 - C8 -4DDQ - GYRA_BACSU -
33 PsiBlast_CBE 84.4671% -91 - C8 -5CDQ 3.9 GYRA_STAAN
4 PsiBlast_PDB 84.2171% -90 - C8 -5CDR 4.9 GYRA_STAAN
27 PsiBlast_CBE 84.1571% -88 - C8 -5CDP 6.0 GYRA_STAAN
26 PsiBlast_CBE 83.9871% -89 - C8 -5CDR 5.4 GYRA_STAAN
3 PsiBlast_PDB 83.8171% -88 - C8 -5CDP 4.8 GYRA_STAAN
32 PsiBlast_CBE 83.6771% -89 - C8 -5CDQ 5.4 GYRA_STAAN
28 PsiBlast_CBE 83.6671% -91 - C8 -5CDO 5.4 GYRA_STAAN
31 PsiBlast_CBE 83.5971% -88 - C8 -5CDM 5.8 GYRA_STAAN
36 PsiBlast_CBE 83.4471% -91 - C8 -5CDN 4.8 GYRA_STAAN
30 PsiBlast_CBE 83.3271% -90 - C8 -5CDO 5.6 GYRA_STAAN
24 PsiBlast_CBE 83.2971% -86 - C8 -2XCR 4.6 GYRA_STAAN (first)
35 PsiBlast_CBE 83.2671% -88 - C8 -5CDN 4.8 GYRA_STAAN
72 HHSearch 83.1736% -86 - C7 -1ZVU - PARC_ECOLI -
39 PsiBlast_CBE 82.9758% -89 - C8 -2Y3P 2.7 GYRA_ECOLI (first)
29 PsiBlast_CBE 82.9671% -89 - C8 -5CDO 4.7 GYRA_STAAN
23 PsiBlast_CBE 82.5471% -88 - C8 -2XCR 4.0 GYRA_STAAN (first)
2 PsiBlast_PDB 82.4971% -86 - C8 -2XCR 4.4 GYRA_STAAN (first)
25 PsiBlast_CBE 82.3071% -83 - C8 -2XCR 5.4 GYRA_STAAN (first)
10 PsiBlast_PDB 81.3158% -88 - C8 -2Y3P 2.6 GYRA_ECOLI (first)
40 PsiBlast_CBE 78.9556% -83 - C8 -3IFZ 3.2 GYRA_MYCTU
14 PsiBlast_PDB 78.3656% -84 - C8 -3ILW 2.7 GYRA_MYCTU
75 HHSearch 78.1957% -84 - C8 -3ILW 2.7 GYRA_MYCTU
50 PsiBlast_CBE 77.8156% -80 - C8 -3ILW 2.8 GYRA_MYCTU
13 PsiBlast_PDB 77.7756% -85 - C8 -3IFZ 3.6 GYRA_MYCTU
19 PsiBlast_PDB 76.4245% -88 - C8 -3KSB 4.0 PARC_STRPN
56 PsiBlast_CBE 76.1445% -83 - C8 -4KOE 4.4 PARC_STRPN
65 PsiBlast_CBE 76.0045% -88 - C8 -3KSB 4.7 PARC_STRPN
58 PsiBlast_CBE 75.9345% -85 - C8 -3RAF 3.8 PARC_STRPN
60 PsiBlast_CBE 75.8045% -84 - C8 -3RAE 4.3 PARC_STRPN
62 PsiBlast_CBE 75.7445% -86 - C8 -3RAD 3.5 PARC_STRPN
63 PsiBlast_CBE 75.6545% -81 - C8 -3RAD 4.5 PARC_STRPN
51 PsiBlast_CBE 75.6045% -85 - C8 -4I3H 5.3 ?
54 PsiBlast_CBE 75.4745% -82 - C8 -4KPE 4.0 PARC_STRPN
16 PsiBlast_PDB 75.4445% -82 - C8 -4I3H 3.7 ?
52 PsiBlast_CBE 75.4245% -82 - C8 -4KPF 4.4 PARC_STRPN
18 PsiBlast_PDB 75.3145% -86 - C8 -3KSA 4.5 PARC_STRPN
59 PsiBlast_CBE 75.1745% -81 - C8 -3RAF 4.2 PARC_STRPN
66 PsiBlast_CBE 75.1345% -86 - C8 -3KSA 4.1 PARC_STRPN
67 PsiBlast_CBE 74.9845% -79 - C8 -3K9F 3.8 PARC_STRPN
17 PsiBlast_PDB 74.9445% -78 - C8 -3K9F 3.0 PARC_STRPN
20 PsiBlast_PDB 74.7745% -84 - C8 -3LTN 3.9 PARC_STRPN
64 PsiBlast_CBE 74.6145% -84 - C8 -3LTN 3.5 PARC_STRPN
8 PsiBlast_PDB 62.5071% 7 - C8 -5CDQ Error GYRA_STAAN
34 PsiBlast_CBE 62.4071% 7 - C8 -5CDQ Error GYRA_STAAN
37 PsiBlast_CBE 62.2471% 8 - C8 -5CDN Error GYRA_STAAN (first)
7 PsiBlast_PDB 58.1571% 9 - C8 -5CDN Error GYRA_STAAN (first)