@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00110: (2016-06-01 )
MAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_A_8(4ADU)
PDX1_PLABE
[Raw transfer]




GOL_C_6(4JDY)
PDXS_MYCTU
[Raw transfer]




R5P_B_9(4ADU)
PDX1_PLABE
[Raw transfer]




GOL_A_4(4JDY)
PDXS_MYCTU
[Raw transfer]




GOL_B_5(4JDY)
PDXS_MYCTU
[Raw transfer]




MPD_B_8(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_C_5(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_D_6(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_A_7(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_A_7(2ZBT)
PDXS_THET8
[Raw transfer]




21 PsiBlast_CBE 94.86100%-106 - C6 -2NV2 - PDXS_BACSU -
1 PsiBlast_PDB 94.67100%-109 - C6 -2NV2 - PDXS_BACSU -
26 PsiBlast_CBE 94.03100%-105 - C6 -2NV2 - PDXS_BACSU -
150 HHSearch 93.84100%-110 - C6 -2NV1 - PDXS_BACSU -
31 PsiBlast_CBE 93.81100%-107 - C6 -2NV2 - PDXS_BACSU -
2 PsiBlast_PDB 93.79100%-110 - C6 -2NV1 - PDXS_BACSU -
34 PsiBlast_CBE 92.82100%-114 - C6 -2NV1 - PDXS_BACSU -
35 PsiBlast_CBE 92.75100%-116 - C6 -2NV1 - PDXS_BACSU -
33 PsiBlast_CBE 92.33100%-108 - C6 -2NV1 - PDXS_BACSU -
36 PsiBlast_CBE 92.22100%-112 - C6 -2NV1 - PDXS_BACSU -
5 PsiBlast_PDB 90.5484% -96 - C6 -4WXY - PDXS_GEOKA -
45 PsiBlast_CBE 89.0184%-112 - C6 -4WY0 - PDXS_GEOKA -
47 PsiBlast_CBE 88.9484%-113 - C6 -4WY0 - PDXS_GEOKA -
44 PsiBlast_CBE 88.5984%-116 - C6 -4WY0 - PDXS_GEOKA -
51 PsiBlast_CBE 88.2784%-112 - C6 -4WY0 - PDXS_GEOKA -
3 PsiBlast_PDB 87.4385%-102 - C6 -4WY0 - PDXS_GEOKA -
46 PsiBlast_CBE 87.3684%-112 - C6 -4WY0 - PDXS_GEOKA -
37 PsiBlast_CBE 87.3485%-110 - C6 -4WY0 - PDXS_GEOKA -
6 PsiBlast_PDB 87.1684%-121 - C6 -4WXZ - PDXS_GEOKA -
48 PsiBlast_CBE 87.0184%-105 - C6 -4WY0 - PDXS_GEOKA -
55 PsiBlast_CBE 85.1366%-100 - C6 -2ZBT 2.8 PDXS_THET8
8 PsiBlast_PDB 84.6866%-100 - C6 -2ZBT 2.8 PDXS_THET8
57 PsiBlast_CBE 84.6466%-100 - C6 -2ZBT 2.7 PDXS_THET8
56 PsiBlast_CBE 84.4166%-101 - C6 -2ZBT 2.6 PDXS_THET8
151 HHSearch 83.3466% -96 - C6 -2ZBT 2.8 PDXS_THET8
12 PsiBlast_PDB 83.0565%-100 - C6 -4JDY 2.7 PDXS_MYCTU
66 PsiBlast_CBE 82.5265%-100 - C6 -4JDY 2.8 PDXS_MYCTU
65 PsiBlast_CBE 82.1965%-100 - C6 -4JDY 2.8 PDXS_MYCTU
71 PsiBlast_CBE 81.1457%-101 - C6 -4ADU 4.3 PDX1_PLABE
18 PsiBlast_PDB 80.2057%-103 - C6 -4ADU 3.5 PDX1_PLABE