@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00130: (2016-06-01 )
MLDTKMLRANFQEIKAKLVHKGEDLTDFDKFEALDDRRRELIGKVEELKGKRNEVSQQVAVLKREKKDADHIIKEMREVGEEIKKLDEELRTVEAELDTILLSIPNIPHESVPVGETEDDNVEVRKWGEKPSFAYEPKPHWDIADELGILDFERAAKVTGSRFVFYKGLGARLERALYNFMLDLHVDEYNYTEVIPPYMVNRASMTGTGQLPKFEEDAFKIREEDYFLIPTAEVPITNMHRDEILSGDSLPINYAAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNQAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSQDTYREISSCSNFEAFQARRANIRFRREAKGKPEHVHTLNGSGLAVGRTVAAILENYQQEDGSVVIPKVLRPYMGNREVMKP

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3LSS)
?
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




ATP_A_2(3QO7)
SYSC_CANAL
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_C_3(1SET)
SYS_THET2
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_B_11(2DQ0)
SYS_PYRHO
[Raw transfer]




SSA_D_4(1SET)
SYS_THET2
[Raw transfer]




SSA_A_2(4L87)
SYSC_HUMAN
[Raw transfer]




AMP_B_8(2ZR2)
SYS_PYRHO
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(2ZR2)
SYS_PYRHO
[Raw transfer]




AMP_D_4(1SES)
SYS_THET2
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




ANP_A_4(4RQF)
SYSC_HUMAN
[Raw transfer]




AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]




ANP_B_7(4RQF)
SYSC_HUMAN
[Raw transfer]




1 PsiBlast_PDB 86.7959% -79 - C3 -2DQ3 6.4 SYS_AQUAE
35 HHSearch 86.5159% -78 - C3 -2DQ3 6.4 SYS_AQUAE
21 PsiBlast_CBE 81.4342% -71 - C3 -2ZR2 5.7 SYS_PYRHO
38 HHSearch 80.8744% -69 - C3 -2DQ0 6.4 SYS_PYRHO
2 PsiBlast_PDB 79.8442% -70 - C3 -2DQ0 6.4 SYS_PYRHO
22 PsiBlast_CBE 79.7842% -71 - C3 -2DQ0 6.5 SYS_PYRHO
3 PsiBlast_PDB 79.6942% -72 - C3 -2ZR2 5.7 SYS_PYRHO
4 PsiBlast_PDB 79.2242% -68 - C3 -2ZR3 - SYS_PYRHO -
39 HHSearch 75.5031% -70 * C3 *1WLE 7.1 SYSM_BOVIN
36 HHSearch 74.8938% -68 - C3 -1SES 6.3 SYS_THET2
41 HHSearch 74.2435% -68 - C3 -3QNE - SYSC_CANAL -
40 HHSearch 74.2135% -71 - C3 -3VBB - SYSC_HUMAN -
57 Fugue 74.1431% -67 - C3 -1WLE - SYSM_BOVIN -
12 PsiBlast_PDB 73.5734% -66 - C3 -3QO8 - SYSC_CANAL -
17 PsiBlast_PDB 73.0133% -67 - C3 -1WLE 7.1 SYSM_BOVIN
9 PsiBlast_PDB 72.7735% -67 - C3 -3QO5 - SYSC_CANAL -
11 PsiBlast_PDB 72.6034% -66 - C3 -3QO7 4.1 SYSC_CANAL
10 PsiBlast_PDB 72.5734% -67 - C3 -3QNE - SYSC_CANAL -
37 HHSearch 71.7035% -60 - C3 -3LSS 6.4 ?
59 Fugue 71.3235% -63 - C3 -3LSS 5.6 ?
7 PsiBlast_PDB 70.2439% -57 - C3 -1SET 6.5 SYS_THET2
23 PsiBlast_CBE 69.7639% -56 - C3 -1SET 6.6 SYS_THET2
6 PsiBlast_PDB 69.5139% -60 - C3 -1SES 6.3 SYS_THET2
24 PsiBlast_CBE 69.1739% -56 - C3 -1SES 5.6 SYS_THET2
14 PsiBlast_PDB 67.5638% -72 - C3 -4L87 7.2 SYSC_HUMAN
58 Fugue 66.4233% -54 - C3 -3ERR 6.1 DYHC1_MOUSE (first)
33 PsiBlast_CBE 66.3337% -68 - C3 -4RQF 3.5 SYSC_HUMAN
42 HHSearch 66.1138% -70 - C3 -3ERR 6.1 DYHC1_MOUSE (first)
16 PsiBlast_PDB 66.0837% -69 - C3 -4RQF 4.1 SYSC_HUMAN
26 PsiBlast_CBE 65.0536% -61 - C3 -3LSS 5.6 ?
8 PsiBlast_PDB 64.4938% -59 - C3 -3ERR 6.1 DYHC1_MOUSE (first)
25 PsiBlast_CBE 64.0538% -60 - C3 -3ERR 5.9 SYS_THET2