@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00690: (2016-06-02 )
MNRVFRNTIFYLLILLVVIGVVSYFQTSNPKTENMSYSTFIKNLDDGKVDSVSVQPVRGVYEVKGQLKNYDKDQYFLTHVPEGKGADQIFNALKKTDVKVEPAQETSGWVTFLTTIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSKAKLYTEEKKRVKFKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHGTLPERNFSDDEKNDDVKVNILTKTEEKKDDTKE

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_C_9(4WW0)
FTSH_AQUAE
[Raw transfer]




AGS_A_3(4KO8)
TERA_HUMAN
[Raw transfer]




ADP_A_5(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_A_5(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_A_2(2QZ4)

[Raw transfer]




ADP_C_8(2R65)
FTSH_HELPY
[Raw transfer]




ADP_B_5(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_2(2QZ4)

[Raw transfer]




ADP_C_6(3H4M)
PAN_METJA
[Raw transfer]




ADP_B_7(4WW0)
FTSH_AQUAE
[Raw transfer]




ATP_A_3(2ZAN)
VPS4B_MOUSE
[Raw transfer]




ADP_B_7(2R65)
FTSH_HELPY
[Raw transfer]




ADP_A_6(2R65)
FTSH_HELPY
[Raw transfer]




ADP_E_10(2R65)
FTSH_HELPY
[Raw transfer]




ADP_A_4(3H4M)
PAN_METJA
[Raw transfer]




ADP_D_9(2R65)
FTSH_HELPY
[Raw transfer]




ADP_A_2(1E32)
TERA_MOUSE
[Raw transfer]




ANP_B_2(1IY0)
FTSH_THET8
[Raw transfer]




ADP_B_2(1IY1)
FTSH_THET8
[Raw transfer]




1 PsiBlast_PDB 95.0062% -92 - C2 -3KDS - FTSH_THEMA -
22 PsiBlast_CBE 94.1762% -94 - C2 -2CEA - FTSH_THEMA -
25 PsiBlast_CBE 93.6862% -92 - C2 -2CE7 - FTSH_THEMA -
103 Fugue 93.3361% -91 - C2 -2CE7 - FTSH_THEMA -
23 PsiBlast_CBE 92.3262% -93 - C2 -2CEA - FTSH_THEMA -
26 PsiBlast_CBE 92.0862% -91 - C2 -2CE7 - FTSH_THEMA -
24 PsiBlast_CBE 91.1762% -88 - C2 -2CE7 - FTSH_THEMA -
21 PsiBlast_CBE 91.0062% -92 - C2 -2CEA - FTSH_THEMA -
30 PsiBlast_CBE 90.6459% -80 - C2 -2DHR - FTSH_THET8 -
28 PsiBlast_CBE 90.5559% -81 - C2 -2DHR - FTSH_THET8 -
35 PsiBlast_CBE 89.8559% -76 - C2 -4EIW - FTSH_THET8 -
114 HHSearch 89.5056% -89 - C2 -4WW0 8.6 FTSH_AQUAE
3 PsiBlast_PDB 89.4659% -76 - C2 -4EIW - FTSH_THET8 -
37 PsiBlast_CBE 89.4559% -87 - C2 -4Z8X - FTSH_AQUAE -
5 PsiBlast_PDB 89.3159% -86 - C2 -4Z8X - FTSH_AQUAE -
33 PsiBlast_CBE 89.3059% -77 - C2 -4EIW - FTSH_THET8 -
4 PsiBlast_PDB 89.2759% -89 - C2 -4WW0 8.6 FTSH_AQUAE
2 PsiBlast_PDB 89.2459% -79 - C2 -2DHR - FTSH_THET8 -
39 PsiBlast_CBE 89.1459% -88 - C2 -4WW0 8.2 FTSH_AQUAE
38 PsiBlast_CBE 89.0359% -87 - C2 -4Z8X - FTSH_AQUAE -
40 PsiBlast_CBE 88.5259% -87 - C2 -4WW0 8.5 FTSH_AQUAE
12 PsiBlast_PDB 72.8071% -83 - C2 -1IY1 5.5 FTSH_THET8
11 PsiBlast_PDB 71.6071% -77 - C2 -1IY0 5.2 FTSH_THET8
42 PsiBlast_CBE 69.4464% -95 - C2 -2R65 5.2 FTSH_HELPY
14 PsiBlast_PDB 67.4248% -79 - C2 -3H4M 7.0 PAN_METJA
46 PsiBlast_CBE 66.9948% -77 - C2 -3H4M 6.7 PAN_METJA
41 PsiBlast_CBE 66.8464% -84 - C2 -2R65 4.8 FTSH_HELPY
9 PsiBlast_PDB 66.1764% -89 - C2 -2R65 6.0 FTSH_HELPY
43 PsiBlast_CBE 65.9364% -82 - C2 -2R65 6.9 FTSH_HELPY
44 PsiBlast_CBE 65.5364% -83 - C2 -2R65 5.4 FTSH_HELPY
45 PsiBlast_CBE 65.2548% -77 - C2 -3H4M 6.2 PAN_METJA
130 HHSearch 64.1952% -90 - C2 -2QZ4 8.0
121 HHSearch 64.0438% -71 - C2 -4KO8 7.7 TERA_HUMAN
13 PsiBlast_PDB 63.9451% -86 - C2 -2QZ4 8.0
104 Fugue 59.8330% -73 - C2 -1E32 6.4 TERA_MOUSE
131 HHSearch 58.8037% -87 - C2 -2ZAN 7.1 VPS4B_MOUSE