@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00860: (2016-06-02 )
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGEFVVKTTAKTN

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(4LJ9)

[Raw transfer]




MNT_C_8(4LJ7)

[Raw transfer]




ACP_A_2(4LJ9)

[Raw transfer]




MNT_A_4(4LJ7)
CLPB_THET8
[Raw transfer]




ACP_A_2(4LJA)

[Raw transfer]




ADP_A_3(4CIU)
CLPB_ECOLI
[Raw transfer]




ADP_A_2(4LJ5)

[Raw transfer]




MNT_B_6(4LJ7)
CLPB_THET8
[Raw transfer]




ADP_A_4(4FCV)
CLPB_THET8
[Raw transfer]




ADP_X_6(1R6B)
CLPA_ECOLI
[Raw transfer]




ADP_X_8(1KSF)
CLPA_ECOLI
[Raw transfer]




ADP_X_6(1R6B)
CLPA_ECOLI
[Raw transfer]




ADP_A_4(4FCW)
CLPB_THET8
[Raw transfer]




ADP_D_6(4FD2)

[Raw transfer]




ADP_A_4(4FD2)
CLPB_THET8
[Raw transfer]




ADP_B_5(4FD2)
CLPB_THET8
[Raw transfer]




4 PsiBlast_PDB 91.3399% -80 - C2 -3J3U - CLPC_BACSU -
1 PsiBlast_PDB 90.5099% -78 - C2 -3J3S - CLPC_BACSU -
3 PsiBlast_PDB 90.2099% -79 - C2 -3J3R - CLPC_BACSU -
2 PsiBlast_PDB 89.1799% -75 - C1 -3J3T - CLPC_BACSU -
97 HHSearch 88.6799% -99 - C2 -3PXI - CLPC_BACSU -
5 PsiBlast_PDB 87.8593% -99 - C2 -3PXI - CLPC_BACSU -
84 Fugue 78.4649% -81 - C1 -1QVR - CLPB_THET8 -
98 HHSearch 77.4357% -96 - C1 -4CIU 7.0 CLPB_ECOLI
96 HHSearch 74.5441% -88 - C1 -1R6B 8.2 CLPA_ECOLI
8 PsiBlast_PDB 72.3138% -83 - C1 -1R6B 8.1 CLPA_ECOLI
7 PsiBlast_PDB 71.1538% -84 * C1 *1KSF 8.1 CLPA_ECOLI
6 PsiBlast_PDB 64.8596% -72 - C2 -3PXG - CLPC_BACSU -
99 HHSearch 61.5498% -78 - C2 -3PXG - CLPC_BACSU -
11 PsiBlast_PDB 58.7257%-100 - C1 -4LJ7 9.4 CLPB_THET8
22 PsiBlast_CBE 58.5957%-100 - C1 -4LJ7 7.1 CLPB_THET8
10 PsiBlast_PDB 58.5157% -98 - C1 -4LJ5 6.6
17 PsiBlast_PDB 58.3956% -96 - C1 -4FCW 7.6 CLPB_THET8
12 PsiBlast_PDB 58.0957% -95 - C1 -4LJ9 6.7
24 PsiBlast_CBE 58.0157% -94 - C1 -4FD2 6.2 CLPB_THET8
102 HHSearch 57.9559% -95 - C1 -4LJ9 6.7
13 PsiBlast_PDB 57.6657% -97 - C1 -4LJA 7.2
16 PsiBlast_PDB 57.6556% -93 - C1 -4FCV 6.7 CLPB_THET8
21 PsiBlast_CBE 57.5457%-103 - C1 -4LJ7 8.3
15 PsiBlast_PDB 57.4757% -94 - C1 -4FD2 6.5 CLPB_THET8
23 PsiBlast_CBE 57.0357% -95 - C1 -4FD2 6.0