@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00920: (2016-06-02 )
MGNEVRVRYAPSPTGHLHIGNARTALFNYLFARNQGGKFIIRVEDTDKKRNIEGGEQSQLNYLKWLGIDWDESVDVGGEYGPYRQSERNDIYKVYYEELLEKGLAYKCYCTEEELEKEREEQIARGEMPRYSGKHRDLTQEEQEKFIAEGRKPSIRFRVPEGKVIAFNDIVKGEISFESDGIGDFVIVKKDGTPTYNFAVAIDDYLMKMTHVLRGEDHISNTPKQIMIYQAFGWDIPQFGHMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEALFNFIGLLGWSPVGEEELFTKEQFIEIFDVNRLSKSPALFDMHKLKWVNNQYVKKLDLDQVVELTLPHLQKAGKVGTELSAEEQEWVRKLISLYHEQLSYGAEIVELTDLFFTDEIEYNQEAKAVLEEEQVPEVLSTFAAKLEELEEFTPDNIKASIKAVQKETGHKGKKLFMPIRVAVTGQTHGPELPQSIELIGKETAIQRLKNI

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]




ATP_A_3(1N75)
SYE_THET8
[Raw transfer]




GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]




ATP_A_4(1J09)
SYE_THET8
[Raw transfer]




ATP_A_4(1J09)
SYE_THET8
[Raw transfer]




GLU_A_4(4GRI)
SYE_BORBU
[Raw transfer]




GLU_B_7(4GRI)
SYE_BORBU
[Raw transfer]




GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]




GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]




GLU_B_2(2CUZ)
SYE_THET8
[Raw transfer]




41 HHSearch 96.9242% -79 - C5 -2CFO 2.8 SYE_THEEB
27 PsiBlast_CBE 96.0839% -79 - C5 -2CV1 - SYE_THET8 -
13 PsiBlast_PDB 96.0239% -81 - C5 -2CV2 - SYE_THET8 -
14 PsiBlast_PDB 95.9939% -79 - C5 -2DXI - SYE_THET8 -
8 PsiBlast_PDB 95.7139% -80 - C5 -1N77 - SYE_THET8 -
26 PsiBlast_CBE 95.6339% -79 - C5 -2CV2 - SYE_THET8 -
12 PsiBlast_PDB 95.6139% -79 - C5 -2CV1 - SYE_THET8 -
28 PsiBlast_CBE 95.3939% -79 - C5 -2CV0 - SYE_THET8 -
29 PsiBlast_CBE 95.3239% -78 - C5 -1N78 - SYE_THET8 -
11 PsiBlast_PDB 95.2739% -79 - C5 -2CV0 - SYE_THET8 -
25 PsiBlast_CBE 95.2539% -80 - C5 -2DXI - SYE_THET8 -
44 HHSearch 95.2339% -79 * C5 *1J09 7.1 SYE_THET8
7 PsiBlast_PDB 95.1539% -80 - C5 -1N75 6.8 SYE_THET8
30 PsiBlast_CBE 95.0839% -79 - C5 -1N77 - SYE_THET8 -
31 Fugue 94.9039% -76 - C5 -1G59 - SYE_THET8 -
10 PsiBlast_PDB 94.8639% -79 - C5 -2CUZ 4.4 SYE_THET8
9 PsiBlast_PDB 94.8139% -79 - C5 -1N78 - SYE_THET8 -
6 PsiBlast_PDB 94.7239% -79 - C5 -1J09 7.1 SYE_THET8
43 HHSearch 94.2339% -77 - C5 -4GRI 3.4 SYE_BORBU
1 PsiBlast_PDB 94.0841% -83 - C5 -2O5R - SYE1_THEMA -
2 PsiBlast_PDB 93.6741% -77 - C5 -2CFO 2.8 SYE_THEEB
24 PsiBlast_CBE 92.1338% -76 - C5 -4GRI 3.5 SYE_BORBU
45 HHSearch 88.8040% -75 - C5 -3AFH 6.8 SYE2_THEMA
4 PsiBlast_PDB 86.3239% -73 - C5 -3AFH 6.7 SYE2_THEMA