@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00940: (2016-06-02 )
MTITLYNTLTRQKETFVPLEEGKVKMYVCGPTVYNYIHIGNARPAIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVGALGCRKADLHPRVMENMDAIIEFVDQLVKKGYAYESEGDVYFKTRAFEGYGKLSQQSIDELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSPWGKGRPGWHIECSAMVKKYLGDQIDIHAGGQDLTFPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDIIKQHDPQLLRFFMLSVHYRHPINYSEELLENTKSAFSRLKTAYSNLQHRLNSSTNLTEDDDQWLEKVEEHRKAFEEEMDDDFNTANAISVLFDLAKHANYYLQKDHTADHVITAFIEMFDRIVSVLGFSLGEQELLDQEIEDLIEKRNEARRNRDFALSDQIRDQLKSMNIILEDTAQGTRWKRGE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5CA_A_12(3C8Z)
MSHC_MYCS2
[Raw transfer]




5CA_A_12(3C8Z)
MSHC_MYCS2
[Raw transfer]




5CA_B_11(3C8Z)
MSHC_MYCS2
[Raw transfer]




AMP_B_6(3SP1)
SYC_BORBU
[Raw transfer]




AMP_A_4(3SP1)
SYC_BORBU
[Raw transfer]




AMP_A_4(3SP1)
SYC_BORBU
[Raw transfer]




CYS_B_6(1LI7)
SYC_ECOLI
[Raw transfer]




CYS_A_5(1LI7)
SYC_ECOLI
[Raw transfer]




EDO_A_6(3KFL)
?
[Raw transfer]




49 Fugue 97.2145% -81 - C3 -1U0B - SYC_ECOLI -
3 PsiBlast_PDB 97.0744% -80 - C3 -1U0B - SYC_ECOLI -
50 Fugue 92.1347% -95 - C3 -1LI5 - SYC_ECOLI -
25 HHSearch 91.7047% -94 - C3 -1LI5 - SYC_ECOLI -
22 PsiBlast_CBE 90.2935% -90 - C3 -3SP1 4.3 SYC_BORBU
1 PsiBlast_PDB 90.0744% -88 - C3 -1LI5 - SYC_ECOLI -
2 PsiBlast_PDB 89.9244% -87 - C3 -1LI7 2.8 SYC_ECOLI
21 PsiBlast_CBE 86.7344% -88 - C3 -1LI7 3.4 SYC_ECOLI
4 PsiBlast_PDB 85.9135% -92 - C3 -3SP1 4.2 SYC_BORBU
27 HHSearch 84.0135% -87 - C3 -3SP1 4.2 SYC_BORBU
28 HHSearch 83.5934% -82 - C3 -3C8Z 4.9 MSHC_MYCS2
5 PsiBlast_PDB 82.0933% -77 - C3 -3C8Z 4.9 MSHC_MYCS2
23 PsiBlast_CBE 79.7333% -79 - C3 -3C8Z 5.5 MSHC_MYCS2
34 HHSearch 70.2919% -78 - C3 -4PY2 - ? -
30 HHSearch 69.4019% -74 * C3 *4QRE - ? -
45 HHSearch 69.0318% -79 - C3 -2V0C - ? -
37 HHSearch 64.6418% -63 - C3 -2D5B - SYM_THET8 -
31 HHSearch 64.2715% -70 - C3 -3KFL 2.3 ?
36 HHSearch 63.7517% -74 - C3 -2X1L - ? -
29 HHSearch 63.5919% -73 - C3 -1RQG - SYM_PYRAB -