@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu01770: (2016-06-03 )
MGKYFGTDGVRGVANSELTPELAFKVGRFGGYVLTKDKQRPKVLIGRDTRISGHMLEGALVAGLLSIGAEVMRLGVISTPGVSYLTKAMDAEAGVMISASHNPVQDNGIKFFGGDGFKLSDEQEAEIERLMDEPEDKLPRPVGADLGLVNDYFEGGQKYLQFLKQTADEDFTGIHVALDCANGATSSLATHLFADLDADVSTMGTSPNGLNINDGVGSTHPEALSAFVKEKNADLGLAFDGDGDRLIAVDEKGNIVDGDQIMYICSKHLKSEGRLKDDTVVSTVMSNLGFYKALEKEGIKSVQTAVGDRYVVEAMKKDGYNVGGEQSGHLIFLDYNTTGDGLLSAIMLMNTLKATGKPLSELAAEMQKFPQLLVNVRVTDKYKVEENEKVKAVISEVEKEMNGDGRILVRPSGTEPLVRVMAEAKTKELCDEYVNRIVEVVRSEMGLE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G1P_X_2(1P5D)
ALGC_PSEAE
[Raw transfer]




M1P_X_2(1PCJ)
ALGC_PSEAE
[Raw transfer]




R1P_X_2(2H4L)
ALGC_PSEAE
[Raw transfer]




X1P_X_3(2H5A)
ALGC_PSEAE
[Raw transfer]




M6P_X_3(1PCM)
ALGC_PSEAE
[Raw transfer]




G16_A_2(2FKF)
ALGC_PSEAE
[Raw transfer]




TLA_A_3(4MRQ)
ALGC_PSEAE
[Raw transfer]




TLA_X_3(1K2Y)
ALGC_PSEAE
[Raw transfer]




1 PsiBlast_PDB 97.9579% -88 - C3 -3PDK - GLMM_BACAN -
35 HHSearch 97.8579% -89 - C3 -3PDK - GLMM_BACAN -
21 PsiBlast_CBE 97.4079% -89 - C3 -3PDK - GLMM_BACAN -
2 PsiBlast_PDB 80.2239% -75 - C3 -3I3W - GLMM_FRATT -
37 HHSearch 77.8538% -75 - C3 -3I3W - GLMM_FRATT -
36 HHSearch 74.9334% -65 - C3 -1WQA - ? -
24 PsiBlast_CBE 73.2034% -64 - C3 -1WQA - ? -
23 PsiBlast_CBE 73.1234% -63 - C3 -1WQA - ? -
22 PsiBlast_CBE 72.8934% -63 - C3 -1WQA - ? -
6 PsiBlast_PDB 72.8128% -71 - C3 -1K2Y 2.9 ALGC_PSEAE
3 PsiBlast_PDB 72.7034% -63 - C3 -1WQA - ? -
14 PsiBlast_PDB 72.4528% -70 - C3 -2H5A 4.6 ALGC_PSEAE
5 PsiBlast_PDB 72.0928% -70 - C3 -4MRQ 3.7 ALGC_PSEAE
12 PsiBlast_PDB 72.0528% -71 - C3 -1PCM 4.5 ALGC_PSEAE
17 PsiBlast_PDB 71.7928% -69 - C3 -4IL8 - ALGC_PSEAE -
11 PsiBlast_PDB 71.7928% -70 - C3 -1PCJ 4.6 ALGC_PSEAE
10 PsiBlast_PDB 71.7128% -71 - C3 -1P5G - ALGC_PSEAE -
13 PsiBlast_PDB 71.6028% -69 - C3 -2H4L 3.9 ALGC_PSEAE
7 PsiBlast_PDB 71.6028% -71 - C3 -2FKF 4.1 ALGC_PSEAE
40 HHSearch 71.4528% -65 - C3 -1P5D - ALGC_PSEAE -