@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu01780: (2016-06-03 )
MCGIVGYIGQLDAKEILLKGLEKLEYRGYDSAGIAVANEQGIHVFKEKGRIADLREVVDANVEAKAGIGHTRWATHGEPSYLNAHPHQSALGRFTLVHNGVIENYVQLKQEYLQDVELKSDTDTEVVVQVIEQFVNGGLETEEAFRKTLTLLKGSYAIALFDNDNRETIFVAKNKSPLLVGLGDTFNVVASDAMAMLQVTNEYVELMDKEMVIVTDDQVVIKNLDGDVITRASYIAELDASDIEKGTYPHYMLKETDEQPVVMRKIIQTYQDENGKLSVPGDIAAAVAEADRIYIIGCGTSYHAGLVGKQYIEMWANVPVEVHVASEFSYNMPLLSKKPLFIFLSQSGETADSRAVLVQVKALGHKALTITNVPGSTLSREADYTLLLHAGPEIAVASTKAYTAQIAVLAVLASVAADKNGINIGFDLVKELGIAANAMEALCDQKDEMEMIAREYLTVSRNAFFIGRGLDYFVCVEGALKLKEISYIQAEGFAGGELKHGTIALIEQGTPVFALATQEHVNLSIRGNVKEVAARGANTCIISLKGLDDADDRFVLPEVNPALAPLVSVVPLQLIAYYAALHRGCDVDKPRNLAKSVTVE

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]



GLP_X_2(2VF5)
GLMS_ECOLI
[Raw transfer]



GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]



G6P_A_2(1MOR)
GLMS_ECOLI
[Raw transfer]



AGP_A_6(1MOS)
GLMS_ECOLI
[Raw transfer]



AGP_A_2(2ZJ4)
GFPT1_HUMAN
[Raw transfer]



G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]



G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]



G6Q_A_3(2J6H)
GLMS_ECOLI
[Raw transfer]



G6Q_B_4(2J6H)
GLMS_ECOLI
[Raw transfer]



BG6_B_4(2PUW)
GFA1_CANAL
[Raw transfer]



BG6_A_3(2PUW)
GFA1_CANAL
[Raw transfer]



GLP_A_2(1MOQ)
?
[Raw transfer]
2 PsiBlast_PDB 93.6840% -95 - C2 -4AMV - GLMS_ECOLI -
4 PsiBlast_PDB 92.8740% -93 - C2 -2J6H 3.5 GLMS_ECOLI
22 PsiBlast_CBE 92.6840% -95 - C2 -4AMV - GLMS_ECOLI -
21 PsiBlast_CBE 92.4440% -95 - C2 -4AMV - GLMS_ECOLI -
51 HHSearch 92.3740% -93 - C2 -4AMV - GLMS_ECOLI -
25 PsiBlast_CBE 91.8140% -92 - C2 -2J6H 4.4 GLMS_ECOLI
30 PsiBlast_CBE 90.1440% -96 - C2 -3OOJ - GLMS_ECOLI -
3 PsiBlast_PDB 89.7340% -90 - C2 -1JXA - GLMS_ECOLI -
27 PsiBlast_CBE 89.7240% -97 - C2 -3OOJ - GLMS_ECOLI -
32 PsiBlast_CBE 89.6740% -93 - C2 -3OOJ - GLMS_ECOLI -
28 PsiBlast_CBE 89.1340% -98 - C2 -3OOJ - GLMS_ECOLI -
7 PsiBlast_PDB 88.8440% -91 - C2 -3OOJ - GLMS_ECOLI -
31 PsiBlast_CBE 88.7840% -92 - C2 -3OOJ - GLMS_ECOLI -
29 PsiBlast_CBE 88.7040% -92 - C2 -3OOJ - GLMS_ECOLI -
26 PsiBlast_CBE 88.2440% -91 - C2 -3OOJ - GLMS_ECOLI -
24 PsiBlast_CBE 88.2240% -89 - C2 -1JXA - GLMS_ECOLI -
23 PsiBlast_CBE 87.3740% -89 - C2 -1JXA - GLMS_ECOLI -
54 HHSearch 82.9271%-117 - C2 -4S1W - ? -
1 PsiBlast_PDB 82.4970%-117 - C2 -4S1W - ? -
8 PsiBlast_PDB 68.2042% -91 - C2 -1MOS 4.4 GLMS_ECOLI
9 PsiBlast_PDB 67.0642% -92 - C2 -1MOQ 4.4 GLMS_ECOLI
10 PsiBlast_PDB 67.0142% -89 - C2 -1MOR 4.2 GLMS_ECOLI
56 HHSearch 66.6441% -92 - C2 -1MOQ 4.4 GLMS_ECOLI
6 PsiBlast_PDB 66.0040% -90 - C2 -2VF5 3.3 GLMS_ECOLI
52 HHSearch 63.9336% -93 - C2 -2ZJ3 3.5 GFPT1_HUMAN
12 PsiBlast_PDB 63.7637% -95 - C2 -2ZJ3 3.5 GFPT1_HUMAN
13 PsiBlast_PDB 63.3937% -93 - C2 -2ZJ4 4.4 GFPT1_HUMAN
18 PsiBlast_PDB 63.0035%-101 - C2 -2PUW 2.9 GFA1_CANAL
36 PsiBlast_CBE 62.2735%-100 - C2 -2PUW 3.0 GFA1_CANAL
80 Fugue 39.9040% -76 * C2 *1MOQ Error ?