@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu02320: (2016-06-03 )
MYYEKAVQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQKEVGMSVASYIRLRRLANAAAALLYTDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGAYRTFMKRFTSKKEESYMEKKMKGWVLSGSHPFQFEMGIDRENVHQGKASGYLKSTMVQDIGEFATMMQQFKADRYLGKRLRLSSFIKTKGVQHFASLWMRVDSAADDVLQFDNMSNRPITGTTNWNHYAIVLDVPENSAVISFGVQLSGPGQVWMDHVVFEEVDESVPSTNLEMPGELLDEPVNLSFEEELQK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_O_3(1D5Y)
ROB_ECOLI
[Raw transfer]

-

NACID_M_1(1D5Y)
ROB_ECOLI
[Raw transfer]

-

NACID_B_1(1BL0)
MARA_ECOLI
[Raw transfer]

-

NACID_M_1(1D5Y)
ROB_ECOLI
[Raw transfer]

-

NACID_B_1(1BL0)
MARA_ECOLI
[Raw transfer]

-

NACID_M_1(1D5Y)
ROB_ECOLI
[Raw transfer]

-

NACID_O_3(1D5Y)
ROB_ECOLI
[Raw transfer]

-

32 HHSearch 69.0124%-135 - C2 -3W6V - ? -
25 HHSearch 68.3425%-162 - C2 -4FE7 - XYLR_ECOLI -
1 PsiBlast_PDB 67.9939%-142 - C2 -1D5Y 5.0 ROB_ECOLI
4 PsiBlast_PDB 67.8425%-171 - C2 -4FE7 - XYLR_ECOLI -
2 PsiBlast_PDB 66.6138%-102 - C2 -1BL0 4.3 MARA_ECOLI
22 PsiBlast_CBE 66.5839%-140 - C2 -1D5Y 4.1 ROB_ECOLI
29 HHSearch 66.3335% -94 - C2 -1BL0 - MARA_ECOLI -
21 PsiBlast_CBE 65.8539%-138 - C2 -1D5Y 4.0 ROB_ECOLI
45 Fugue 65.4433% -81 * C2 *1BL0 - MARA_ECOLI -
5 PsiBlast_PDB 65.1325%-152 - C2 -4FE4 - XYLR_ECOLI -
28 HHSearch 65.0023%-143 - C2 -3OIO - ? -
23 PsiBlast_CBE 64.6739%-141 - C2 -1D5Y 2.3 ROB_ECOLI
9 PsiBlast_PDB 64.5623%-149 - C2 -3W6V - ? -
30 HHSearch 64.4822%-169 - C2 -3MN2 - ? -
6 PsiBlast_PDB 63.7627%-137 - C2 -2K9S - -
46 Fugue 63.5219% -58 - C2 -1D5Y - ROB_ECOLI -
27 HHSearch 62.9226%-135 - C2 -3OOU - ? -
31 HHSearch 62.8723%-147 - C2 -2K9S - -
52 Fugue 62.7116% -78 - C1 -1FIU - T2M4_NEIGO -
8 PsiBlast_PDB 61.9427%-129 - C2 -3OOU - ? -
47 Fugue 46.3735% -96 - C2 -1BL0 4.4 MARA_ECOLI
50 Fugue 46.1640%-113 - C2 -1D5Y 3.6 ROB_ECOLI