@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu02430: (2016-06-04 )
MKELIKEHQKDINPALQLHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPYVLDRVDVEPTGDAFNSIIRLEINKPGKPFNPMINAGALTIASILPGESAYEKLEFLYSVMETLIGKRPRIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVEETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEWELSIF

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DON_A_4(2OSU)
GLSA1_BACSU
[Raw transfer]




ONL_A_3(3BRM)
GLSA1_BACSU
[Raw transfer]




GLU_B_4(3AGE)
?
[Raw transfer]




GLU_A_3(3VP1)
GLSK_HUMAN
[Raw transfer]




GLU_B_4(3IHA)
?
[Raw transfer]




GLU_A_3(3CZD)
GLSK_HUMAN
[Raw transfer]




GLN_A_2(3VP0)
GLSK_HUMAN
[Raw transfer]




GLU_A_3(3AGE)
?
[Raw transfer]




GLU_A_3(3IHB)
?
[Raw transfer]




ONL_A_2(4O7D)
GLSK_HUMAN
[Raw transfer]




GLU_A_3(3IHA)
?
[Raw transfer]




GLU_B_4(3IHB)
?
[Raw transfer]




EDO_B_12(1U60)
GLSA1_ECOLI
[Raw transfer]




EDO_D_15(1U60)
GLSA1_ECOLI
[Raw transfer]




EDO_A_8(1U60)
GLSA1_ECOLI
[Raw transfer]




EDO_A_8(1U60)
GLSA1_ECOLI
[Raw transfer]




EDO_D_16(1U60)
GLSA1_ECOLI
[Raw transfer]




57 HHSearch 89.4199%-113 - C6 -1MKI - GLSA1_BACSU -
1 PsiBlast_PDB 89.24100%-119 - C6 -3AGF - GLSA1_BACSU -
2 PsiBlast_PDB 88.8296%-126 - C6 -2OSU 3.1 GLSA1_BACSU
3 PsiBlast_PDB 86.6496%-122 - C6 -3BRM 3.5 GLSA1_BACSU
58 HHSearch 74.0449%-132 * C6 *2PBY - GLSA_GEOKA -
4 PsiBlast_PDB 73.4748%-134 - C6 -2PBY - GLSA_GEOKA -
48 Fugue 72.7531%-127 - C6 -3UO9 - GLSK_HUMAN -
61 HHSearch 72.2632%-124 - C6 -3UO9 - GLSK_HUMAN -
50 Fugue 70.5536%-108 - C6 -3IF5 - ? -
62 HHSearch 69.1335%-116 - C6 -3AGD - ? -
60 HHSearch 67.5531%-137 - C6 -4BQM - GLSL_HUMAN -
11 PsiBlast_PDB 67.2036%-114 - C6 -3AGE 4.5 ?
23 PsiBlast_CBE 66.4636%-109 - C6 -3AGE 3.4 ?
59 HHSearch 66.2934%-104 - C6 -1U60 2.9 GLSA1_ECOLI
10 PsiBlast_PDB 65.9636%-114 - C6 -3AGD - ? -
8 PsiBlast_PDB 65.2436%-110 - C6 -3IHA 3.5 ?
6 PsiBlast_PDB 65.1736%-109 - C6 -3IH8 - ? -
21 PsiBlast_CBE 64.7636%-111 - C6 -3IHB 2.8 ?
22 PsiBlast_CBE 64.6036%-111 - C6 -3IHA 2.4 ?
7 PsiBlast_PDB 64.5836%-108 - C6 -3IH9 - ? -
9 PsiBlast_PDB 64.4936%-111 - C6 -3IHB 2.9 ?
26 PsiBlast_CBE 64.2934%-103 - C6 -1U60 3.1 GLSA1_ECOLI
12 PsiBlast_PDB 64.2134%-104 - C6 -1U60 2.9 GLSA1_ECOLI
24 PsiBlast_CBE 63.7134%-103 - C6 -1U60 2.9 GLSA1_ECOLI
17 PsiBlast_PDB 63.0634%-106 - C6 -3CZD 3.6 GLSK_HUMAN
35 PsiBlast_CBE 62.9534%-105 - C6 -3VP1 3.8 GLSK_HUMAN
36 PsiBlast_CBE 62.4634%-104 - C6 -4O7D 2.9 GLSK_HUMAN
20 PsiBlast_PDB 61.5834%-103 - C6 -3VP0 2.6 GLSK_HUMAN