@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu02490: (2016-06-04 )
MSSPIQEQVQKEKRSNIPSISEMKVIPVAGHDSMLLNLSGAHSPFFTRNIVILTDSSGNQGVGEVPGGEHIRRTLELSEPLVVGKSIGAYQAILQTVRKQFGDQDRGGRGNQTFDLRTTVHAVTALEAALLDLLGKFLQEPVAALLGEGKQRDEVKMLGYLFYIGDRNRTTLPYQSDEQSDCAWFRLRHEEALTPEAIVRLAESAQERYGFQDFKLKGGVLRGEEEIEAVTALSKRFPEARITLDPNGAWSLEEAIALCKGKQDVLAYAEDPCGDENGYSAREVMAEFRRATGLPTATNMIATDWREMGHAIQLHAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGRITAIDTHWIWQDGQRLTKQPFEISSGCVKVPDKPGLGVDIDMEQVEKAHEIYRKMNLGARNDAIPMQFLISNWEFDRKRPCLVR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GKR_A_5(1JCT)
GUDD_ECOLI
[Raw transfer]




GKR_B_6(1JCT)
GUDD_ECOLI
[Raw transfer]




GLR_A_4(3PWI)
GUDD_ECOLI
[Raw transfer]




GLR_B_7(3PWI)
GUDD_ECOLI
[Raw transfer]




TLA_A_2(3VFC)
?
[Raw transfer]




FMT_A_4(3VC6)
?
[Raw transfer]




FMT_A_2(3VDG)
?
[Raw transfer]




FMT_A_2(3VDG)
?
[Raw transfer]




FMT_A_3(3VC6)
?
[Raw transfer]




FMT_A_4(3VA8)
?
[Raw transfer]




FMT_A_4(3VA8)
?
[Raw transfer]




2 PsiBlast_PDB 86.1072% -87 - C1 -1EC7 - GUDD_ECOLI -
21 PsiBlast_CBE 85.8074% -80 - C1 -4G8T - ? -
1 PsiBlast_PDB 85.4174% -78 - C1 -4G8T - ? -
5 PsiBlast_PDB 84.8072% -79 - C1 -1ECQ - GUDD_ECOLI -
22 PsiBlast_CBE 84.5374% -78 - C1 -4G8T - ? -
44 PsiBlast_CBE 84.4472% -79 - C1 -3PWG - GUDD_ECOLI -
23 PsiBlast_CBE 84.2974% -76 - C1 -4G8T - ? -
35 PsiBlast_CBE 84.2572% -85 - C1 -1EC7 - GUDD_ECOLI -
7 PsiBlast_PDB 84.0372% -78 - C1 -1JDF - GUDD_ECOLI -
42 PsiBlast_CBE 83.7572% -90 - C1 -3PWG - GUDD_ECOLI -
39 PsiBlast_CBE 83.6972% -78 - C1 -1JDF - GUDD_ECOLI -
36 PsiBlast_CBE 83.6972% -77 - C1 -1EC7 - GUDD_ECOLI -
27 PsiBlast_CBE 83.4672% -78 - C1 -1ECQ - GUDD_ECOLI -
6 PsiBlast_PDB 83.4272% -76 - C1 -4GYP - GUDD_ECOLI -
33 PsiBlast_CBE 83.2772% -75 - C1 -1EC8 - GUDD_ECOLI -
34 PsiBlast_CBE 83.2472% -82 - C1 -1EC7 - GUDD_ECOLI -
28 PsiBlast_CBE 83.1872% -75 - C1 -1EC9 - GUDD_ECOLI -
4 PsiBlast_PDB 83.1672% -75 - C1 -1EC9 - GUDD_ECOLI -
24 PsiBlast_CBE 83.0672% -77 - C1 -4GYP - GUDD_ECOLI -
3 PsiBlast_PDB 82.9972% -77 - C1 -1EC8 - GUDD_ECOLI -
9 PsiBlast_PDB 82.5472% -78 - C1 -1JCT 4.0 GUDD_ECOLI
8 PsiBlast_PDB 82.4572% -77 - C1 -3PWI 4.5 GUDD_ECOLI
40 PsiBlast_CBE 81.7672% -77 - C1 -3PWI 3.6 GUDD_ECOLI
41 PsiBlast_CBE 81.2472% -79 - C1 -1JCT 4.1 GUDD_ECOLI
68 PsiBlast_CBE 64.4734% -92 - C1 -3VC6 3.4 ?
77 HHSearch 60.4333% -84 - C1 -3VDG 3.4 ?
65 PsiBlast_CBE 60.2634% -90 - C1 -3VDG 3.4 ?
64 PsiBlast_CBE 59.7334% -95 - C1 -3VFC 2.7 ?
83 HHSearch 57.7035% -82 - C1 -3VA8 3.5 ?
63 PsiBlast_CBE 56.6134% -83 - C1 -3VA8 3.5 ?