@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu03280: (2016-06-05 )
MIMKNGIVYFVGAGPGDPGLLTIKGKQALKEADVILYDRLANPKLLEFASPDCQFIYCGKLPNRHFMKQKEINALLVEKALNGLTVVRLKGGDPSVFGRVGEEADALHEHGIRYEMVPGITSGIAAPLYAGIPVTHRDFASSFAMITAHDKSLKGTPNLDWEGLARSVQTLVFYMGVKNLSYICQQLISYGKSPSVPVIVIQWGTWGRQRSVKGTLENIQQKVQEHQITNPAIIVIGDIVNFQTHSWFESKPLIGRHLMVVTHGEDEDPLADKLRDSGADLIEWPKWRTENMPVNEEILRKIGTFEDVFFTSRRAVCEFFRALASQKIDIRQLTAKLSAASEQAKTELEKRGFLVTAIQPDSEKRLVVGSRHAVENMQKHESCSFYITHENVIDDRFTHMIQRTISESPLHMVICPNKLSVQQLINGGEQIGILPEPSASRPPIVCIGDDSAAGIYGFTAVQEQDELLAFIHNQHAEKKLLHT

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_D_4(1PJS)
CYSG_SALTY
[Raw transfer]




SAH_F_6(1PJS)
CYSG_SALTY
[Raw transfer]




SAH_A_2(2YBO)
?
[Raw transfer]




SAH_A_2(2YBO)
?
[Raw transfer]




SAH_B_7(1PJQ)
CYSG_SALTY
[Raw transfer]




SAH_E_5(1PJT)
CYSG_SALTY
[Raw transfer]




SAH_F_6(1V9A)
?
[Raw transfer]




SAH_D_4(1PJT)
CYSG_SALTY
[Raw transfer]




SAH_E_5(1V9A)
?
[Raw transfer]




UP2_A_3(2YBQ)
?
[Raw transfer]




22 PsiBlast_CBE 91.0943%-142 - C2 -1PJQ 8.2 CYSG_SALTY
51 HHSearch 90.0441%-142 - C2 -1S4D - SUMT_PSEDE -
29 PsiBlast_CBE 89.2639%-140 - C2 -1S4D - SUMT_PSEDE -
6 PsiBlast_PDB 89.2439%-135 - C2 -1S4D - SUMT_PSEDE -
34 PsiBlast_CBE 88.8039%-140 - C2 -1S4D - SUMT_PSEDE -
23 PsiBlast_CBE 88.5243%-138 - C2 -1PJT 7.8 CYSG_SALTY
4 PsiBlast_PDB 88.2743%-149 - C2 -2YBO 7.0 ?
31 PsiBlast_CBE 87.6339%-140 - C2 -1S4D - SUMT_PSEDE -
5 PsiBlast_PDB 87.1743%-152 - C2 -2YBQ 8.3 ?
52 HHSearch 87.1343%-145 - C2 -2YBO 7.0 ?
26 PsiBlast_CBE 86.8339%-136 - C2 -1S4D - SUMT_PSEDE -
21 PsiBlast_CBE 86.6843%-139 - C2 -1PJS 8.0 CYSG_SALTY
27 PsiBlast_CBE 86.6439%-143 - C2 -1S4D - SUMT_PSEDE -
24 PsiBlast_CBE 86.3139%-140 - C2 -1S4D - SUMT_PSEDE -
25 PsiBlast_CBE 86.3039%-143 - C2 -1S4D - SUMT_PSEDE -
28 PsiBlast_CBE 85.7539%-133 - C2 -1S4D - SUMT_PSEDE -
30 PsiBlast_CBE 85.1839%-135 - C2 -1S4D - SUMT_PSEDE -
33 PsiBlast_CBE 84.9939%-142 - C2 -1S4D - SUMT_PSEDE -
3 PsiBlast_PDB 84.8943%-137 - C2 -1PJT 5.8 CYSG_SALTY
2 PsiBlast_PDB 84.3543%-144 - C2 -1PJS 7.8 CYSG_SALTY
8 PsiBlast_PDB 81.4941%-134 - C2 -1V9A 7.4 ?
36 PsiBlast_CBE 81.0441%-139 - C2 -1V9A 7.5 ?