@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu03510: (2016-06-06 )
MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSLSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHSLKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDMPEWLASWEEATTGVYRVKRGFGTHAEMLQGETLDRNAEILLEFLNTQTVTVS

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4D4I)
?
[Raw transfer]




AMP_A_6(4D56)
?
[Raw transfer]




AMP_A_2(3VNS)
?
[Raw transfer]




ANP_A_2(4D4G)
?
[Raw transfer]




AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]




AMP_A_6(4D57)
?
[Raw transfer]




AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]




GAP_A_2(4OXI)
?
[Raw transfer]




AMP_B_10(1AMU)
GRSA_ANEMI
[Raw transfer]




AMP_A_2(4DG8)
?
[Raw transfer]




AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]




ATP_A_2(3VNQ)
?
[Raw transfer]




AMP_A_2(4DG8)
?
[Raw transfer]




APC_A_4(5ES7)
LGRA_BREPA
[Raw transfer]




GOL_A_13(3ETC)
?
[Raw transfer]




64 HHSearch 64.0599% -99 - C1 -2VSQ - SRFAC_BACSU -
1 PsiBlast_PDB 63.9999% -99 - C1 -2VSQ - SRFAC_BACSU -
9 PsiBlast_PDB 44.7726% -92 - C1 -4ZXJ - ENTF_ECOLI -
55 Fugue 41.2636%-115 - C1 -1AMU 6.6 GRSA_ANEMI
67 HHSearch 41.1237%-101 - C1 -5ES8 - LGRA_BREPA -
4 PsiBlast_PDB 41.1227%-106 - C1 -4ZXI - ? -
21 PsiBlast_CBE 41.0097%-135 - C2 -1JMK - -
3 PsiBlast_PDB 40.9527%-108 - C1 -4ZXH - ? -
13 PsiBlast_PDB 40.7735%-117 - C1 -4D56 7.2 ?
12 PsiBlast_PDB 40.7135%-115 - C1 -4D4I 7.0 ?
14 PsiBlast_PDB 40.4735%-116 - C1 -4D57 6.7 ?
65 HHSearch 40.4225%-106 - C1 -4ZXH - ? -
10 PsiBlast_PDB 40.3635%-114 - C1 -4D4G 7.4 ?
11 PsiBlast_PDB 40.0835%-128 - C1 -4D4H - ? -
6 PsiBlast_PDB 39.6738% -99 - C1 -5ES8 - LGRA_BREPA -
84 HHSearch 39.4737%-107 - C1 -1AMU 6.6 GRSA_ANEMI
22 PsiBlast_CBE 39.0638% -96 - C1 -5ES8 - LGRA_BREPA -
7 PsiBlast_PDB 38.5938%-110 - C1 -5ES9 - LGRA_BREPA -
8 PsiBlast_PDB 38.4836%-105 - C1 -1AMU 6.7 GRSA_ANEMI
24 PsiBlast_CBE 38.0936%-104 - C1 -1AMU 6.8 GRSA_ANEMI
18 PsiBlast_PDB 35.7431%-105 - C1 -4DG8 6.4 ?
26 PsiBlast_CBE 35.1733% -97 - C1 -3VNS 6.0 ?
20 PsiBlast_PDB 34.8633% -98 - C1 -3VNQ 7.9 ?
16 PsiBlast_PDB 34.6638%-118 - C1 -5ES7 4.3 LGRA_BREPA
68 HHSearch 34.0530%-104 - C1 -4DG8 6.4 ?