@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu03790: (2016-06-06 )
MKVVKFGGSSLASGAQLDKVFHIVTSDPARKAVVVSAPGKHYAEDTKVTDLLIACAEQYLATGSAPELAEAVVERYALIANELQLGQSIIEKIRDDLFTLLEGDKSNPEQYLDAVKASGEDNNAKLIAAYFRYKGVKAEYVNPKDAGLFVTNEPGNAQVLPESYQNLYRLRERDGLIIFPGFFGFSKDGDVITFSRSGSDITGSILANGLQADLYENFTDVDAVYSVNPSFVENPKEISELTYREMRELSYAGFSVFHDEALIPAFRAGIPVQIKNTNNPSAEGTRVVSKRDNTNGPVVGIASDTGFCSIYISKYLMNREIGFGRRALQILEEHGLTYEHVPSGIDDMTIILRQGQMDAATERSVIKRIEEDLHADEVIVEHHLALIMVVGEAMRHNVGTTARAAKALSEAQVNIEMINQGSSEVSMMFGVKEAEERKAVQALYQEFFAGVLIS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_A_2(2J0W)
AK3_ECOLI
[Raw transfer]



ASP_A_4(2J0X)
AK3_ECOLI
[Raw transfer]



LYS_A_7(2CDQ)
AK1_ARATH
[Raw transfer]
32 HHSearch 93.7838%-103 - C1 -3TVI - ? -
23 Fugue 88.8029%-114 - C1 -2CDQ - AK1_ARATH -
1 PsiBlast_PDB 87.0129%-115 - C1 -2CDQ 4.5 AK1_ARATH
34 HHSearch 86.3129%-106 - C1 -2CDQ - AK1_ARATH -
33 HHSearch 84.1927%-109 - C1 -3C1M - AK_METJA -
4 PsiBlast_PDB 82.8126%-116 - C1 -2J0X 2.0 AK3_ECOLI
31 HHSearch 82.1427%-108 - C1 -2J0W - AK3_ECOLI -
5 PsiBlast_PDB 81.9326%-107 - C1 -2J0W 3.1 AK3_ECOLI
22 Fugue 80.2126%-106 - C1 -3C1M - AK_METJA -
2 PsiBlast_PDB 79.9926%-100 - C1 -2HMF - AK_METJA -
3 PsiBlast_PDB 78.9526%-106 - C1 -3C1N - AK_METJA -
36 HHSearch 70.6025%-112 - C1 -3L76 - ? -
6 PsiBlast_PDB 65.7424%-107 - C1 -3AAW - AK_CORGL -
7 PsiBlast_PDB 64.6525%-112 - C1 -3L76 - ? -
41 HHSearch 52.6915%-110 - C1 -1YBD - PYRH_NEIMB -
43 HHSearch 51.9721%-102 - C1 -1Z9D - PYRH_STRP1 -
50 HHSearch 51.2223%-116 - C1 -2IJ9 - PYRH_ARCFU -
40 HHSearch 51.1419%-104 * C1 *4A7W - PYRH_HELPY -
46 HHSearch 50.0515%-106 - C1 -2RD5 - NAGK_ARATH -
37 HHSearch 49.8922%-103 - C1 -1GS5 - ARGB_ECOLI -