@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu04190: (2016-06-07 )
MANYPKELPAQTQSRQPGIESEMNPSPVYEYEDYKGADKLKGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEETVAQFGQDTPMGRPGQPVEHVGCYVLLASDESSYMTGQTLHVNGGNFVTT

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(3R3S)
?
[Raw transfer]




NAD_B_8(3R3S)
?
[Raw transfer]




NAD_C_12(3R3S)
?
[Raw transfer]




NAD_D_15(3R3S)
?
[Raw transfer]




FMT_D_16(3R3S)
?
[Raw transfer]




FMT_C_13(3R3S)
?
[Raw transfer]




EDO_C_9(4BMN)
?
[Raw transfer]




PEG_A_6(3OSU)
FABG_STAAM
[Raw transfer]




27 PsiBlast_CBE 77.2961% -56 - C1 -3I3O - ? -
23 PsiBlast_CBE 76.0461% -60 - C1 -3I3O - ? -
122 HHSearch 75.4961% -53 - C1 -3IJR - ? -
25 PsiBlast_CBE 74.7361% -54 - C1 -3I3O - ? -
1 PsiBlast_PDB 74.6861% -55 - C1 -3I3O - ? -
26 PsiBlast_CBE 74.6561% -54 - C1 -3I3O - ? -
2 PsiBlast_PDB 74.5160% -53 - C1 -3IJR - ? -
24 PsiBlast_CBE 74.2361% -53 - C1 -3I3O - ? -
30 PsiBlast_CBE 71.9147% -59 - C1 -3R3S 11.4 ?
21 PsiBlast_CBE 71.8561% -55 - C1 -3I3O - ? -
29 PsiBlast_CBE 70.8847% -58 - C1 -3R3S 11.0 ?
28 PsiBlast_CBE 70.3247% -57 - C1 -3R3S 10.8 ?
3 PsiBlast_PDB 70.0647% -58 - C1 -3R3S 11.2 ?
134 HHSearch 66.7830% -99 - C1 -3AWD - ? -
37 PsiBlast_CBE 66.1735% -88 - C1 -4MOW - ? -
118 HHSearch 65.4031% -90 - C1 -3GAF - ? -
130 HHSearch 64.8832% -89 - C1 -3WDS - ? -
107 Fugue 64.5930%-104 - C1 -1YBV - T4HR_MAGO7 -
9 PsiBlast_PDB 63.6435% -87 - C1 -4MOW - ? -
49 PsiBlast_CBE 63.0732% -72 - C1 -1G6K - DHG_BACME -
83 PsiBlast_CBE 58.4233% -84 - C1 -4BMN 3.6 ?
16 PsiBlast_PDB 51.2435% -72 - C1 -3OSU 2.7 FABG_STAAM