@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu04330: (2016-06-07 )
MSEFKQQELFWSNMFDAEDRLIAFPSFHMSDSALEHDALNTSNSIHTSLRSDVSLRIMTMAIIPMAVYLVLLVGIKCLLHKYTGEESIIVGVPTFEDETDEDLRLDQIMLLKQNINENSTFKSIFNEFKHTLNDAILHQDVPFDKMVGPLNLNYNSNHLPMIPAIVSLDQIHLIHFKETAASDTLFQFDIKNDAIHLKVTYNEQAYDRQYMMQVIEHLNRLFSIILFQPDITISQLNILTDTEINTFKDYNQTAAEYPREKTIHQLFEEQANRTPDQVAVVYEENQLTYQELNEKANQIARTLQSEGVHPDQPVGIMAERSLEMIVGLFGILKAGGAYVPIDPTYPEERIRYILEDSDTKLLLVQHHLREKVPFTGKVLDMEDPQTFSEDGSNLESISGPNQLAYVIYTSGSTGKPKGVMVEHRSVINRLVWMQENYPLDERDAILQKTAITFDVSVWELFWWSIVGSKVVLLPNGGEKNPELILDTIEQKGVSTLHFVPAMLHAFLESMEQTPSGKLKRKLASLRYVFASGEALTPKHVDGFQRIITPVSHAQIINLYGPTEATIDVSYFECEADKRYNSVPIGKPISNIQLYILQAGYMQPVGVAGELCIAGDGLARGYLNRPELTAEKFVKNPFSAGERMYRTGDLARWLPDGNIEYLGRIDHQVKIRGYRIETGEVEAALFHIPSIQESIVLAQEINEEISLCAYYTANDTLTAGELREHLSRQLPSYMIPAYFIQLKRMPLTLNGKIDRRALPSPRENLTGMDYTAPRTELEKILAATWESVLGLERVGVSDHFFELGGDSIKSIQVSSRLYQAGYKFEIKHLFKYPTISELVPYVEPVTRVAEQGEIKGPALLTPIQHWFFDQRYPDLHHYNQAVMLYWKEGLNVPMLREVMRKIVEHHDALRMVYVPAKHGYEARNREIDEGDLFSLEVFSLLEENNVAQTIETLSNEIQQSIQLAEGPLIKLGLFQCQDGDHLLIVAHHLVIDGVSWRILIEDIAAAYEQLLNGEAIQLPKKTDSYLLWAEQLKRYAESPEFEMKNQYWFQHEHIPLPKLPKDNEQEIGLAEDRETIIVQWTAEETERLLKNAHRAYTTEMNDLLLTGLGIAIHRWTGHEDILIHLEGHGRESIIPDLDISRTVGWFTSQYPVFLPIKADHDISQRIKTVKEHLRKIPQKGIGYGIIKYLSDHREDREFTGQPEISFNFLGQFDQDLQNGSIEVSPYSSGKIASDKHPLTYALDINGMISNGRLSLAISYCGKQYHKETMETCADLLKSSLRQVIEHCTAQDQVQLTPSDISLKEISIDELDQFVQQAQHLGEIENIYPLTPMQKGMLFHSLIDSASGAYFEQAAFDLKGLLDIEAFMMSLSQLAKRYDILRTQFYTEWKEQPLQIVLRHKPIETVVEDIRDMNVDQRSEFIAAFARKDKERGFNLIRDALMRVSILRTDEEKARLIWSFHHILMDGWCLPLITKEVFETYYAIIERRQPKRDAVTPYRQYIEWLDEQDHEQAAVYWRDYLDDYEGQTVLLKEPFSDQARGYQKQKLACRLGKQLTEEIKRAASQHHVTVNTWMQTAWGLLLQRYNGTQDVVFGTVVSGRPADIPGIESMVGLFINTIPVRVCAQPEMTVAQVLKMNQEHALASQPYDTFPLYEIQAQTEQKQQLINHIMVFENYPVEKQMEHMKRDHDVLDISDFHLEEHTHYDFNFIVMPAEDMEMHFVYNANVYDQATVERIQAHFMEIIKQMVNDTAVHVQELDILSEDERSLLIEKFNDTATEYPKEKTIYQLFEEQAARTPEQIAIVFEDQKLTYRQLNEQANQLARTLRAKGVRSDRTAAIISDHSIELVVGILAVLKAGGAYVPIDPDYPEQRIQYILNDSKTEIVLTQSHLQQRLAHEGTIVLLDDENSYHKERSNLERISNIKDLAYVIYTSGSTGKPKGVLIEHQGLTNYIWWADRVYVKGEKTTFPLYSSIAFDLTVTSIFTPLISGNAIIVYGDKDRTTLLSSIIEDSRVDIIKLTPAHLQLLKEMNISPECTIRKMIVGGDNLSTRLAQNISEQFQDQIEIFNEYGPTETVVGCMIYLYDPKKDRQESVPIGTAAANMNIYLLDTGMKPVPIGVPGEMYISGAGVARGYLNRPDLTAEKFVEHPFAAGERMYKTGDAARWMPDGHMEYLGRIDHQVKVRGYRIELGEVEAALLLVESVKEAVVIAVEEEGSNQLCAYVTGDESLKTLQLKQQLQNKLPAYMIPAYFVQIEEMPLTANGKIDREALPAPDGNMLAGTEYAAPRTLIEKQLAEIWKEVLAHSELGIKDNFFDVGGHSLKVLQLVDQINKVMGIKLHYHVVYEAPTIETMAHAIQAAALPSKTENVFVKLNQNGSIPVFCFPPLIGYGLVYNEMANRLDGDCVVYAADFTEDPSYKKPIIDRFAESMIDIQEQGPFVLLGYSSGSNLAFEVAKALEQRGRTVSDVIMLDSQITTSVTHLSEKEVEEIIHLNLDIIPVYYRELLTIPSIKEKIRGYLAYHNQLINSGTINANIHHLLCDDMTERGWTHSTAHNYKEYELKGDHVTIFDPQYIEENMSTIRSIMKCIEEQQLGELVPHEQLSYMSRTKSDRT

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4D4I)
?
[Raw transfer]



ANP_A_2(4D4G)
?
[Raw transfer]



AMP_A_6(4D56)
?
[Raw transfer]



ATP_A_3(3FCE)
DLTA_BACCR
[Raw transfer]



AMP_A_6(4D57)
?
[Raw transfer]



ATP_A_3(3FCC)
DLTA_BACCR
[Raw transfer]



AMP_A_2(3E7X)
DLTA_BACSU
[Raw transfer]



AMP_A_3(3DHV)
DLTA_BACCR
[Raw transfer]



AMP_A_3(3E7W)
DLTA_BACSU
[Raw transfer]



GOL_A_13(3ETC)
?
[Raw transfer]
1 PsiBlast_PDB 59.7735%-101 - C1 -2VSQ - SRFAC_BACSU -
55 HHSearch 59.0235%-104 - C1 -2VSQ - SRFAC_BACSU -
60 HHSearch 48.6230%-100 - C1 -4ZXJ - ENTF_ECOLI -
56 HHSearch 47.2724%-116 - C1 -4ZXH - ? -
62 HHSearch 46.7046% -97 - C1 -5ES8 - LGRA_BREPA -
21 PsiBlast_CBE 45.8645% -95 - C1 -5ES8 - LGRA_BREPA -
3 PsiBlast_PDB 45.5845% -95 - C1 -5ES8 - LGRA_BREPA -
14 PsiBlast_PDB 45.3926%-114 - C1 -4ZXH - ? -
4 PsiBlast_PDB 44.9045%-105 - C1 -5ES9 - LGRA_BREPA -
59 HHSearch 44.8828%-115 - C1 -4ZXH - ? -
58 HHSearch 44.7631% -98 - C1 -2VSQ - SRFAC_BACSU -
15 PsiBlast_PDB 44.7226%-115 - C1 -4ZXI - ? -
11 PsiBlast_PDB 44.6042%-120 - C1 -4D56 6.9 ?
5 PsiBlast_PDB 43.8445%-105 - C1 -1AMU - GRSA_ANEMI -
12 PsiBlast_PDB 43.8242%-118 - C1 -4D57 6.7 ?
23 PsiBlast_CBE 42.9645%-105 - C1 -1AMU - GRSA_ANEMI -
10 PsiBlast_PDB 42.7242%-117 - C1 -4D4I 6.6 ?
2 PsiBlast_PDB 42.5645%-107 - C1 -5ES5 - LGRA_BREPA -
8 PsiBlast_PDB 42.1042%-117 - C1 -4D4G 7.0 ?
13 PsiBlast_PDB 41.9437%-100 - C1 -4ZXJ - ENTF_ECOLI -
30 PsiBlast_CBE 33.2631%-100 - C1 -3E7W 6.2 DLTA_BACSU
26 PsiBlast_CBE 33.0832%-110 - C1 -3FCE 7.1 DLTA_BACCR
28 PsiBlast_CBE 32.7532%-107 - C1 -3DHV 5.5 DLTA_BACCR
29 PsiBlast_CBE 32.1831% -99 - C1 -3E7X 5.8 DLTA_BACSU
27 PsiBlast_CBE 32.1132%-111 - C1 -3FCC 6.7 DLTA_BACCR