@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu04580: (2016-06-07 )
MTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDDTPVRLTDEAPMVSKRYKNQRSSKRRDGQGGGYRGGKGKSNNRSSYDKKRSNDRRSSGDRRQKKSY

Atome Classification :

(72 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_2(5E7M)
DDX3X_HUMAN
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




8OD_B_7(3NBF)
?
[Raw transfer]




ADP_A_2(4LJY)
PRP5_YEAST
[Raw transfer]




M2A_A_3(5ELX)
?
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5Y)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




ADP_A_3(3I62)
MS116_YEAST
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




ANP_A_3(3SQX)
MS116_YEAST
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_A_3(3I61)
MS116_YEAST
[Raw transfer]




ANP_B_4(3B7G)
DDX20_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




AMP_A_3(3IUY)
DDX53_HUMAN
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




ANP_A_3(3B7G)
DDX20_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




ADP_A_4(3RRM)
DBP5_YEAST
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




AMP_A_2(5E7J)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




8OP_D_12(3NBF)
?
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




NACID_D_2(4D25)
?
[Raw transfer]

-

NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_B_2(3SQW)
MS116_YEAST
[Raw transfer]

-

1 PsiBlast_PDB 81.2247%-124 - C2 -1HV8 - H669_METJA -
119 HHSearch 80.4841%-119 - C2 -4PXA 4.7 DDX3X_HUMAN
136 HHSearch 80.4241%-132 - C2 -2I4I 5.7 DDX3X_HUMAN
19 PsiBlast_PDB 79.7640%-134 - C2 -2I4I 5.7 DDX3X_HUMAN
135 HHSearch 79.2948%-118 - C2 -1HV8 - H669_METJA -
34 PsiBlast_CBE 78.6740%-121 - C2 -4PXA 4.7 DDX3X_HUMAN
37 PsiBlast_CBE 76.3836%-144 - C2 -2VSO 5.2 IF4A_YEAST
38 PsiBlast_CBE 76.1236%-144 - C2 -2VSO 5.2 IF4A_YEAST
122 HHSearch 75.8935%-140 - C2 -5ANR - DDX6_HUMAN -
20 PsiBlast_PDB 75.7340%-124 - C2 -5E7I - DDX3X_HUMAN -
32 PsiBlast_CBE 75.5940%-119 - C2 -5E7M 4.8 DDX3X_HUMAN
33 PsiBlast_CBE 75.4240%-117 - C2 -5E7J 5.6 DDX3X_HUMAN
18 PsiBlast_PDB 75.1136%-142 - C2 -5ANR - DDX6_HUMAN -
2 PsiBlast_PDB 75.1139%-114 - C2 -2HYI - IF4A3_HUMAN -
31 PsiBlast_CBE 75.0936%-133 - C2 -4CT4 - DDX6_HUMAN -
48 PsiBlast_CBE 75.0032%-131 - C2 -3EWS 6.6 DD19B_HUMAN
16 PsiBlast_PDB 74.7636%-139 - C2 -4CT4 - DDX6_HUMAN -
3 PsiBlast_PDB 74.6739%-114 - C2 -3EX7 - IF4A3_HUMAN -
116 HHSearch 74.4140%-136 - C2 -3EIQ - IF4A1_HUMAN -
26 PsiBlast_CBE 74.3442%-126 - C2 -4KBF - ? -
134 HHSearch 74.0743%-106 - C2 -4KBF 5.0 ?
35 PsiBlast_CBE 74.0336%-140 - C2 -2VSX 4.4 IF4A_YEAST
36 PsiBlast_CBE 73.8036%-140 - C2 -2VSX 5.0 IF4A_YEAST
7 PsiBlast_PDB 73.6639%-115 - C2 -2J0S 9.0 IF4A3_HUMAN
9 PsiBlast_PDB 73.3542%-109 - C2 -4KBF 5.0 ?
131 HHSearch 72.7932%-142 - C2 -4LJY 6.3 PRP5_YEAST
127 HHSearch 72.4440%-107 - C2 -2DB3 10.4 VASA1_DROME
52 PsiBlast_CBE 71.2332%-121 - C2 -3FHT 9.2 DD19B_HUMAN
13 PsiBlast_PDB 70.9838%-136 - C2 -4BRW 2.0 DHH1_YEAST
120 HHSearch 70.8737%-109 - C2 -4D25 11.9 ?
40 PsiBlast_CBE 70.2737%-110 - C2 -4D25 7.7 ?
51 PsiBlast_CBE 70.1832%-118 - C2 -3G0H 8.0 DD19B_HUMAN
53 PsiBlast_CBE 70.0332%-119 - C2 -3FHT 8.5 DD19B_HUMAN
130 HHSearch 69.8433%-120 - C2 -3FHT 8.5 DD19B_HUMAN
39 PsiBlast_CBE 69.6137%-110 - C2 -4D26 5.0 ?
47 PsiBlast_CBE 68.2835%-115 - C2 -5ELX 8.0 ?
46 PsiBlast_CBE 67.2835%-112 - C2 -3PEY 8.0 DBP5_YEAST
45 PsiBlast_CBE 67.0635%-115 - C2 -3PEW 8.0 DBP5_YEAST
43 PsiBlast_CBE 65.6535%-119 - C2 -3RRN 4.5 DBP5_YEAST
44 PsiBlast_CBE 64.7135%-125 - C2 -3RRM 5.7 DBP5_YEAST
126 HHSearch 64.5435%-113 - C2 -3I5X 9.5 MS116_YEAST
132 HHSearch 63.2534%-110 - C2 -3SQW 7.9 MS116_YEAST
133 HHSearch 62.2135%-104 - C2 -3PEY 8.0 DBP5_YEAST
69 PsiBlast_CBE 59.2833%-106 - C2 -3I62 7.5 MS116_YEAST
72 PsiBlast_CBE 59.1333%-106 - C2 -3I5X 9.5 MS116_YEAST
70 PsiBlast_CBE 58.4133%-104 - C2 -3I61 7.9 MS116_YEAST
71 PsiBlast_CBE 58.3833%-103 - C2 -3I5Y 8.7 MS116_YEAST
77 PsiBlast_CBE 57.3433%-101 - C2 -3SQX 9.5 MS116_YEAST
59 PsiBlast_CBE 57.2144%-143 - C2 -3NBF 3.4 ?
57 PsiBlast_CBE 56.6245%-140 - C2 -2GXS 5.9 ?
58 PsiBlast_CBE 55.9045%-137 - C2 -2GXQ 6.1 ?
92 PsiBlast_CBE 55.6834%-150 - C2 -1T6N 2.5 DX39B_HUMAN
62 PsiBlast_CBE 55.4244%-135 - C2 -3NBF 4.0 ?
56 PsiBlast_CBE 55.1445%-137 - C2 -2GXS 4.9 ?
63 PsiBlast_CBE 55.0944%-144 - C2 -3MWL 3.7 ?
60 PsiBlast_CBE 54.7544%-136 - C2 -3NBF 4.4 ?
91 PsiBlast_CBE 54.0334%-149 - C2 -1T6N 2.9 DX39B_HUMAN
88 PsiBlast_CBE 53.7336%-147 - C2 -4PX9 5.7 DDX3X_HUMAN
90 PsiBlast_CBE 53.6236%-148 - C2 -4PX9 5.7 DDX3X_HUMAN
89 PsiBlast_CBE 53.4236%-147 - C2 -4PX9 5.2 DDX3X_HUMAN
65 PsiBlast_CBE 53.3444%-135 - C2 -3MWK 4.2 ?
83 PsiBlast_CBE 53.1237%-145 - C2 -3FE2 5.4 DDX5_HUMAN
61 PsiBlast_CBE 53.0744%-130 - C2 -3NBF 5.2 ?
94 PsiBlast_CBE 52.5737%-161 - C2 -3IUY 5.4 DDX53_HUMAN
82 PsiBlast_CBE 52.4937%-140 - C2 -3FE2 6.5 DDX5_HUMAN
93 PsiBlast_CBE 51.1337%-155 - C2 -3IUY 6.0 DDX53_HUMAN
97 PsiBlast_CBE 51.0333%-157 - C2 -2OXC 6.5 DDX20_HUMAN
98 PsiBlast_CBE 50.2633%-152 - C2 -2OXC 7.1 DDX20_HUMAN
96 PsiBlast_CBE 50.2433%-152 - C2 -3B7G 6.0 DDX20_HUMAN
81 PsiBlast_CBE 50.0438%-135 - C2 -3BER 5.0 DDX47_HUMAN
84 PsiBlast_CBE 49.2139%-133 - C2 -2PL3 6.0 DDX10_HUMAN
95 PsiBlast_CBE 49.0233%-154 - C2 -3B7G 6.0 DDX20_HUMAN