@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu05740: (2016-06-09 )
MKKFPKKLLPIAVLSSIAFSSLASGSVPEASAQEKKKGNQDEIKNVIVLIGDGMGVSYTSAYRYLKDNKKTKVVEPTAFDQYLVGQQTTYPDDPEQNVTDSAAAATAMSAGIKTYNNAIAVDNDGSEAKTVLEAAKEKGKATGLVATSEITHATPASFGSHDHSRKNMNSIADDYFDEMVNGKHKIDVLLGGGKSNFDRKDRNLIKEFKKAGYSYVDDRKDMLKNKDSQVLGLFADGGLPKKIDRTKDIPSLKDMTNTAIKKLNKDKDGFFLMVEGSQIDWAGHDNDIVGAMSEMEDFEQAYKAAIDFAKKDKHTLVVATADHSTGGYSIGADGIYNWFSEPIKAAKRTPDFMAEKIADGADVEKTLKTYIDQKKLALTKAEIQSVEEAAKSKEVLDIDNAIENIFNKRSHTGWTTGGHTGEDVPVYAYGPSSETFAGQIDNTEIAKNVFKALQYNIKINDK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_21(3E2D)
?
[Raw transfer]




EDO_A_21(3E2D)
?
[Raw transfer]




PAE_A_15(1EW8)
PPB_ECOLI
[Raw transfer]




PAE_B_16(1EW8)
PPB_ECOLI
[Raw transfer]




AF3_A_9(1KH5)
PPB_ECOLI
[Raw transfer]




AF3_B_8(1KHJ)
PPB_ECOLI
[Raw transfer]




AF3_B_10(1KH5)
PPB_ECOLI
[Raw transfer]




GOL_B_12(4YR1)
PPB_ECOLI
[Raw transfer]




AF3_A_7(1KHJ)
PPB_ECOLI
[Raw transfer]




MMQ_A_13(1EW9)
PPB_ECOLI
[Raw transfer]




MMQ_B_14(1EW9)
PPB_ECOLI
[Raw transfer]




CHAIN_C_3(3DPC)
PPB_ECOLI
[Raw transfer]

-

EDO_A_21(3E2D)
?
[Raw transfer]




115 HHSearch 95.9841% -63 - C6 -3A52 - ? -
1 PsiBlast_PDB 95.5141% -63 - C6 -3A52 - ? -
21 PsiBlast_CBE 95.1241% -65 - C6 -3A52 - ? -
111 HHSearch 88.9134% -53 - C6 -3E2D Error ?
112 HHSearch 88.7636% -44 - C6 -2X98 - ? -
113 HHSearch 88.6932% -54 - C6 -3WBH - ? -
2 PsiBlast_PDB 86.9630% -46 - C6 -3WBH - ? -
103 Fugue 86.6534% -47 - C6 -3E2D 2.8 ?
23 PsiBlast_CBE 84.1934% -43 - C6 -2X98 - ? -
4 PsiBlast_PDB 83.8634% -42 - C6 -2X98 - ? -
22 PsiBlast_CBE 81.7932% -46 - C6 -3E2D - ? -
3 PsiBlast_PDB 81.7532% -45 - C6 -3E2D Error ?
114 HHSearch 81.3535% -30 - C6 -3TG0 - PPB_ECOLI -
117 HHSearch 81.0232% -41 - C6 -1ZED - PPB1_HUMAN -
118 HHSearch 78.8238% -48 - C6 -2W5V - ? -
116 HHSearch 77.3429% -48 - C6 -1K7H - ? -
5 PsiBlast_PDB 75.6332% -49 - C6 -2IUC - ? -
26 PsiBlast_CBE 75.2435% -27 - C6 -1KHN - PPB_ECOLI -
6 PsiBlast_PDB 75.2435% -31 - C6 -1Y7A - PPB_ECOLI -
101 Fugue 75.1032% -25 - C6 -1ED9 - PPB_ECOLI -
7 PsiBlast_PDB 74.1435% -25 - C6 -1KHJ 2.6 PPB_ECOLI
60 PsiBlast_CBE 73.7634% -25 - C6 -1EW8 3.2 PPB_ECOLI
57 PsiBlast_CBE 73.7434% -26 - C6 -1EW9 2.7 PPB_ECOLI
59 PsiBlast_CBE 73.0534% -26 - C6 -1EW8 3.8 PPB_ECOLI
29 PsiBlast_CBE 72.9135% -27 - C6 -1KHJ 2.7 PPB_ECOLI
33 PsiBlast_CBE 72.7635% -23 - C6 -1KH5 2.7 PPB_ECOLI
58 PsiBlast_CBE 72.3534% -24 - C6 -1EW9 2.5 PPB_ECOLI
100 PsiBlast_CBE 72.3134% -28 * C6 *4YR1 0.8 PPB_ECOLI
80 PsiBlast_CBE 72.1134% -33 - C6 -3DPC Error PPB_ECOLI
14 PsiBlast_PDB 71.8435% -23 - C6 -1KH5 2.8 PPB_ECOLI