@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu05940: (2016-06-09 )
MSEQKDMYVLGIETSCDETAAAIVKNGKEIISNVVASQIESHKRFGGVVPEIASRHHVEQITLVIEEAFRKAGMTYSDIDAIAVTEGPGLVGALLIGVNAAKALSFAYNIPLVGVHHIAGHIYANRLVEDIVFPALALVVSGGHTELVYMKEHGSFEVIGETLDDAAGEAYDKVARTMGLPYPGGPQIDKLAEKGNDNIPLPRAWLEEGSYNFSFSGLKSAVINTLHNASQKGQEIAPEDLSASFQNSVIDVLVTKTARAAKEYDVKQVLLAGGVAANRGLRAALEKEFAQHEGITLVIPPLALCTDNAAMIAAAGTIAFEKGIRGAYDMNGQPGLELTSYQSLTR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_B_10(3ZEU)
?
[Raw transfer]




AGS_E_16(3ZEU)
?
[Raw transfer]




ATP_A_6(4WQ4)
TSAD_ECOLI
[Raw transfer]




ADP_A_5(4YDU)
TSAD_ECOLI
[Raw transfer]




ATP_B_9(4WQ4)
TSAD_ECOLI
[Raw transfer]




ATP_B_14(4WQ5)
TSAD_ECOLI
[Raw transfer]




AGS_B_10(3ZEU)
?
[Raw transfer]




ATP_A_7(4WQ5)
TSAD_ECOLI
[Raw transfer]




ADP_B_12(4YDU)
TSAD_ECOLI
[Raw transfer]




ANP_A_3(2VWB)
KAE1B_METJA
[Raw transfer]




ANP_B_4(2VWB)
KAE1B_METJA
[Raw transfer]




ATP_A_3(2IVP)
KAE1_PYRAB
[Raw transfer]




ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]




ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]




AMP_B_4(3ZET)
?
[Raw transfer]




ANP_A_3(2IVN)
KAE1_PYRAB
[Raw transfer]




AMP_A_4(3WUH)
QRI7_YEAST
[Raw transfer]




AMP_B_6(3WUH)
QRI7_YEAST
[Raw transfer]




2 PsiBlast_PDB 81.9245%-115 - C2 -3ZEU 8.3 ?
21 PsiBlast_CBE 81.7245%-119 - C2 -3ZEU 7.4 ?
5 PsiBlast_PDB 81.6644%-116 - C2 -4WQ5 7.5 TSAD_ECOLI
1 PsiBlast_PDB 81.3245%-115 - C2 -3ZET 4.6 ?
4 PsiBlast_PDB 81.2544%-120 - C2 -4WQ4 6.4 TSAD_ECOLI
23 PsiBlast_CBE 81.0544%-117 - C2 -4WQ4 6.7 TSAD_ECOLI
3 PsiBlast_PDB 79.4544%-112 - C2 -4YDU 7.1 TSAD_ECOLI
22 PsiBlast_CBE 79.3944%-113 - C2 -4YDU 6.7 TSAD_ECOLI
44 HHSearch 78.5742%-111 - C2 -3ZEU 7.1 ?
24 PsiBlast_CBE 78.5544%-111 - C2 -4WQ5 8.0 TSAD_ECOLI
6 PsiBlast_PDB 77.2638%-126 - C2 -2IVN 7.0 KAE1_PYRAB
8 PsiBlast_PDB 77.0238%-126 - C2 -2IVP 6.6 KAE1_PYRAB
27 PsiBlast_CBE 76.8838%-129 - C2 -2IVO - KAE1_PYRAB -
26 PsiBlast_CBE 76.8438%-125 - C2 -2IVO - KAE1_PYRAB -
7 PsiBlast_PDB 76.5338%-127 - C2 -2IVO - KAE1_PYRAB -
34 Fugue 76.1036%-115 - C2 -2IVN 6.8 KAE1_PYRAB
25 PsiBlast_CBE 75.3838%-128 - C2 -2IVO - KAE1_PYRAB -
46 HHSearch 74.5436%-117 - C2 -2IVN 6.2 KAE1_PYRAB
29 PsiBlast_CBE 73.6934%-121 - C2 -3EN9 - KAE1B_METJA -
9 PsiBlast_PDB 72.6235%-137 - C2 -3ENO - KAE1B_THEAC -
11 PsiBlast_PDB 72.5134%-129 - C2 -2VWB 6.3 KAE1B_METJA
30 PsiBlast_CBE 71.1734%-129 - C2 -2VWB 5.6 KAE1B_METJA
12 PsiBlast_PDB 67.6231%-111 - C2 -3WUH 5.1 QRI7_YEAST
31 PsiBlast_CBE 65.6331%-112 - C2 -3WUH 4.6 QRI7_YEAST