@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu05950: (2016-06-09 )
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSKRSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTEED

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_P_3(4CRM)
RLI1_YEAST
[Raw transfer]




ADP_A_5(1YQT)
?
[Raw transfer]




ADP_A_7(3BK7)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




2 PsiBlast_PDB 82.2334% -82 - C2 -4FIN - ETTA_ECOLI -
31 HHSearch 79.4933% -84 - C2 -4FIN - ETTA_ECOLI -
1 PsiBlast_PDB 71.2734% -63 - C2 -3J5S - ETTA_ECOLI -
32 HHSearch 69.1728%-102 - C2 -2IW3 - EF3A_YEAST -
12 PsiBlast_PDB 57.3428%-132 - C2 -1OXU - ? -
13 PsiBlast_PDB 56.4828%-132 - C2 -1OXV - ? -
52 HHSearch 56.1225%-129 - C2 -4YER - ? -
9 PsiBlast_PDB 55.8024% -91 - C2 -3BK7 3.8 ?
49 HHSearch 53.7028%-121 - C2 -2IT1 - ? -
14 PsiBlast_PDB 52.7628%-126 - C2 -1OXX - ? -
8 PsiBlast_PDB 52.6424% -83 - C2 -3J15 - ? -
7 PsiBlast_PDB 52.6124% -79 - C2 -1YQT 4.7 ?
34 HHSearch 51.9225%-128 - C2 -4Q9H - MDR1A_MOUSE -
38 HHSearch 51.6924%-135 - C2 -4F4C - PGP1_CAEEL -
47 HHSearch 51.2624%-121 - C2 -4YER - ? -
48 HHSearch 51.2327%-118 - C2 -3FVQ 7.5 FBPC_NEIG1
10 PsiBlast_PDB 51.0928%-125 - C2 -1OXS - ? -
4 PsiBlast_PDB 50.9125%-100 - C2 -2IX3 - EF3A_YEAST -
37 HHSearch 50.4120% -86 - C2 -3OZX - ? -
17 PsiBlast_PDB 50.1123% -79 - C2 -4CRM 3.6 RLI1_YEAST