@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu06060: (2016-06-09 )
MTNFILNENKQLSLAIEDENIENFYIDGTDLVRKIIRRSGSGVTSRVPVLSTQDLENKNLHELYDESWLRMKNRPNTELTTESINIADLFSGCGGLSLGVWEACRALGINPRFSFACDLNEAALSVYEKNFSPDFSLNESIEKHINGELGAPLTVEEQRIKDKVKKIDFILAGPPCQGHSDLNNHTRRKDPRNALLMRVSRVIELFQPSSVLVENVPGIIHDKSGSFKEFKNHLKTQGYYFDEIVLNAEKLGVSQARRRYFIFASKTPVSSLNQINEFYSTNSRPISWAISDLVENVGDDIFNTASEHSLENKRRIEYLFENNLFELPNSERPDCHRLKPHSYKSVYGRMYWDRPAPTITRGFGSTGQGRFVHSLLKRTITPHEAARIQFFPDFFNFGDLRRRQYQDVIGNAVPSKLSYLLALHQLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_A_2(3SWR)
DNMT1_HUMAN
[Raw transfer]



EDO_A_24(3SWR)
DNMT1_HUMAN
[Raw transfer]
33 HHSearch 81.6125% -72 - C1 -3SWR 7.2 DNMT1_HUMAN
34 HHSearch 80.3725% -73 - C1 -4WXX - DNMT1_HUMAN -
2 PsiBlast_PDB 79.9327% 0 - C- -1DCT - MTH3_HAEAE -
4 PsiBlast_PDB 73.9724%-101 - C1 -4H0N - ? -
1 PsiBlast_PDB 71.6828% -85 - C1 -3G7U - ? -
41 HHSearch 71.0524%-103 - C1 -4H0N - ? -
23 Fugue 70.3524% 0 - C- -1DCT - MTH3_HAEAE -
5 PsiBlast_PDB 68.9923%-101 - C1 -1G55 - TRDMT_HUMAN -
40 HHSearch 68.6530% -64 - C1 -3UBT - MTH3_HAEAE -
3 PsiBlast_PDB 67.7227% -57 - C1 -3UBT - MTH3_HAEAE -
38 HHSearch 66.2826% -69 - C1 -3G7U - ? -
8 PsiBlast_PDB 64.7723% -68 - C1 -1MHT - MTH1_HAEPH -
44 HHSearch 64.6522%-105 - C1 -1G55 - TRDMT_HUMAN -
19 PsiBlast_PDB 64.4223% -71 - C1 -1SKM - MTH1_HAEPH -
10 PsiBlast_PDB 64.2423% -67 - C1 -4MHT - MTH1_HAEPH -
20 PsiBlast_PDB 64.1323% -68 - C1 -2C7O - MTH1_HAEPH -
9 PsiBlast_PDB 64.0723% -69 - C1 -3MHT - MTH1_HAEPH -
14 PsiBlast_PDB 63.9523% -74 - C1 -8MHT - MTH1_HAEPH -
11 PsiBlast_PDB 63.6723% -68 - C1 -5MHT - MTH1_HAEPH -
13 PsiBlast_PDB 63.5423% -71 - C1 -7MHT - MTH1_HAEPH -