@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu06150: (2016-06-09 )
MTHTVPQNMKAAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAARTKLQPGSTIAIMGMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKMGATHIINIREQDALEEIKTITNDRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQNEIPLNVPFIADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQDAMERALQFKNECLKVMVYPNR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_8(3M6I)
LAD_NEUCR
[Raw transfer]




NAD_B_8(2EJV)
TDH_THET8
[Raw transfer]




NAD_A_7(2EJV)
TDH_THET8
[Raw transfer]




MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]




MES_A_7(2DQ4)
TDH_THET8
[Raw transfer]




GOL_B_9(4UEJ)
GATD_ECOLI
[Raw transfer]




GOL_A_3(3QE3)
DHSO_SHEEP
[Raw transfer]




MES_B_8(2DQ4)
TDH_THET8
[Raw transfer]




GOL_A_6(4UEJ)
GATD_ECOLI
[Raw transfer]




TRS_A_6(4UEK)
GATD_ECOLI
[Raw transfer]




TRS_B_9(4UEK)
GATD_ECOLI
[Raw transfer]




ACY_A_5(3QE3)
DHSO_SHEEP
[Raw transfer]




136 HHSearch 94.7742%-133 - C1 -1E3J - ? -
1 PsiBlast_PDB 91.5043%-134 - C1 -1E3J - ? -
23 PsiBlast_CBE 89.5842%-120 - C1 -1PL8 - DHSO_HUMAN -
21 PsiBlast_CBE 89.5142%-118 - C1 -1PL8 - DHSO_HUMAN -
3 PsiBlast_PDB 88.1942%-118 - C1 -1PL8 - DHSO_HUMAN -
26 PsiBlast_CBE 87.7542%-116 - C1 -1PL7 - DHSO_HUMAN -
24 PsiBlast_CBE 87.7042%-119 - C1 -1PL7 - DHSO_HUMAN -
2 PsiBlast_PDB 87.2842%-117 - C1 -1PL7 - DHSO_HUMAN -
22 PsiBlast_CBE 87.1642%-118 - C1 -1PL8 - DHSO_HUMAN -
25 PsiBlast_CBE 86.5642%-117 - C1 -1PL7 - DHSO_HUMAN -
4 PsiBlast_PDB 83.9142%-118 - C1 -1PL6 - DHSO_HUMAN -
5 PsiBlast_PDB 82.3942%-118 - C1 -3QE3 3.2 DHSO_SHEEP
37 PsiBlast_CBE 77.9036%-136 - C1 -3PII - ADH3_GEOSE -
130 HHSearch 77.3831%-125 - C1 -1E3I - ADH4_MOUSE -
12 PsiBlast_PDB 77.3136%-135 - C1 -1RJW - ADH3_GEOSE -
40 PsiBlast_CBE 77.3031%-124 - C1 -4CPD - ? -
34 PsiBlast_CBE 77.0236%-136 - C1 -1RJW - ADH3_GEOSE -
35 PsiBlast_CBE 76.9836%-135 - C1 -1RJW - ADH3_GEOSE -
13 PsiBlast_PDB 76.9236%-133 - C1 -3PII - ADH3_GEOSE -
33 PsiBlast_CBE 76.9036%-135 - C1 -1RJW - ADH3_GEOSE -
143 HHSearch 76.5333%-118 - C1 -2DQ4 1.9 TDH_THET8
27 PsiBlast_CBE 72.5537%-130 - C1 -3M6I 8.5 LAD_NEUCR
9 PsiBlast_PDB 69.0933%-115 - C1 -2DQ4 1.9 TDH_THET8
29 PsiBlast_CBE 68.5033%-114 - C1 -2DQ4 3.6 TDH_THET8
28 PsiBlast_CBE 67.9433%-113 - C1 -2EJV 9.6 TDH_THET8
10 PsiBlast_PDB 67.6133%-114 - C1 -2EJV 7.6 TDH_THET8
55 PsiBlast_CBE 48.9932%-112 - C1 -4UEJ 3.4 GATD_ECOLI
54 PsiBlast_CBE 48.5732%-113 - C1 -4UEJ 3.3 GATD_ECOLI
53 PsiBlast_CBE 48.0432%-113 - C1 -4UEK 3.4 GATD_ECOLI
52 PsiBlast_CBE 48.0232%-112 - C1 -4UEK 3.4 GATD_ECOLI