@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu06230: (2016-06-09 )
MNKQGNQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRMPESPRWLVSKGRKEDALRVLKKIRDEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVRRIVFIGLGIAIVQQITGVNSIMYYGTEILRNSGFQTEAALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQLEENFRAYDHSGAKKDSGAEVIG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




4 PsiBlast_PDB 84.8834%-131 - C3 -4GC0 4.3 XYLE_ECOLI
3 PsiBlast_PDB 84.7234%-132 - C3 -4GBZ 3.3 XYLE_ECOLI
2 PsiBlast_PDB 84.5634%-132 - C3 -4GBY 3.4 XYLE_ECOLI
39 Fugue 83.4433%-133 - C3 -4GC0 4.1 XYLE_ECOLI
17 PsiBlast_CBE 80.8634%-145 - C3 -4JA3 - XYLE_ECOLI -
15 PsiBlast_CBE 80.5834%-159 - C3 -4JA4 - XYLE_ECOLI -
5 PsiBlast_PDB 79.8034%-157 - C3 -4JA4 - XYLE_ECOLI -
16 PsiBlast_CBE 79.4234%-156 - C3 -4JA4 - XYLE_ECOLI -
8 PsiBlast_PDB 78.7328%-128 - C3 -4ZW9 - GTR3_HUMAN -
6 PsiBlast_PDB 78.1029%-148 - C3 -4PYP - GTR1_HUMAN -
40 Fugue 77.5734%-164 - C3 -4QIQ - XYLE_ECOLI -
10 PsiBlast_PDB 77.5128%-134 - C3 -4ZWC - GTR3_HUMAN -
9 PsiBlast_PDB 77.5028%-129 - C3 -4ZWB - GTR3_HUMAN -
18 HHSearch 77.2929%-149 - C3 -4PYP - GTR1_HUMAN -
22 HHSearch 77.1334%-133 - C3 -4GC0 4.1 XYLE_ECOLI
7 PsiBlast_PDB 75.5228%-132 - C3 -5C65 - GTR3_HUMAN -
1 PsiBlast_PDB 74.8336%-141 - C3 -4LDS - ? -
21 HHSearch 74.2436%-138 - C3 -4LDS - ? -
23 HHSearch 72.2727%-130 - C3 -4ZW9 - GTR3_HUMAN -
11 PsiBlast_PDB 72.0426%-148 - C3 -4YB9 - GTR5_BOVIN -