@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu06600: (2016-06-10 )
MYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVKGE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1GP_B_13(3VZY)
PCRB_BACSU
[Raw transfer]



CIT_B_4(2F6U)
GGGPS_ARCFU
[Raw transfer]



CIT_A_3(2F6U)
GGGPS_ARCFU
[Raw transfer]



1GP_B_5(4NAE)
?
[Raw transfer]



CIT_A_3(2F6U)
GGGPS_ARCFU
[Raw transfer]



1GP_A_3(2F6X)
GGGPS_ARCFU
[Raw transfer]



1GP_B_4(2F6X)
GGGPS_ARCFU
[Raw transfer]



FPS_B_5(3VZZ)
PCRB_BACSU
[Raw transfer]



FPS_B_4(3W00)
PCRB_BACSU
[Raw transfer]



PE4_A_4(4NAE)
PCRB_GEOKA
[Raw transfer]
3 PsiBlast_PDB 90.68100%-135 - C2 -3VZZ - PCRB_BACSU -
1 PsiBlast_PDB 90.60100%-140 - C2 -3VZX - PCRB_BACSU -
2 PsiBlast_PDB 90.43100%-139 - C2 -3VZY - PCRB_BACSU -
34 HHSearch 89.5699%-136 - C2 -3VZX - PCRB_BACSU -
4 PsiBlast_PDB 89.31100%-136 - C2 -3W00 - PCRB_BACSU -
5 PsiBlast_PDB 89.2799%-138 - C2 -1VIZ - PCRB_BACSU -
24 PsiBlast_CBE 89.26100%-135 - C2 -3VZX - PCRB_BACSU -
22 PsiBlast_CBE 89.09100%-124 - C2 -3VZZ 6.6 PCRB_BACSU
54 Fugue 88.9999%-138 - C2 -1VIZ - PCRB_BACSU -
23 PsiBlast_CBE 88.49100%-129 - C2 -3VZY 3.9 PCRB_BACSU
21 PsiBlast_CBE 87.79100%-128 - C2 -3W00 6.5 PCRB_BACSU
25 PsiBlast_CBE 86.8399%-142 - C2 -1VIZ - PCRB_BACSU -
7 PsiBlast_PDB 79.8361%-154 - C2 -4NAF - ? -
6 PsiBlast_PDB 79.6761%-162 - C2 -4NAE 4.3 ?
26 PsiBlast_CBE 77.6261%-155 - C2 -4NAE 2.6 PCRB_GEOKA
37 HHSearch 77.3259%-146 - C2 -4NAF - ? -
28 PsiBlast_CBE 73.7347%-150 - C2 -3W01 - PCRB_STAA1 -
8 PsiBlast_PDB 73.4347%-141 - C2 -3W01 - PCRB_STAA1 -
9 PsiBlast_PDB 73.2547%-137 - C2 -3W02 - PCRB_STAA1 -
27 PsiBlast_CBE 73.0747%-142 - C2 -3W02 - PCRB_STAA1 -
33 HHSearch 66.7539%-124 - C2 -2F6U 4.6 GGGPS_ARCFU
30 PsiBlast_CBE 63.8439%-133 - C2 -2F6U 3.7 GGGPS_ARCFU
10 PsiBlast_PDB 62.6839%-134 - C2 -2F6U 4.6 GGGPS_ARCFU
11 PsiBlast_PDB 62.0339%-131 - C2 -2F6X 4.1 GGGPS_ARCFU
29 PsiBlast_CBE 61.5239%-133 - C2 -2F6X 2.9 GGGPS_ARCFU