@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu06610: (2016-06-10 )
MNYISNQLLSGLNPVQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKERNLDPKKFDPRSILGTISSAKNELTEPEEFSKVAGGYYDQVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDRVPEVLEFYQRKFQYIHVDEYQDTNRAQYMLVKQLAERFQNLCVVGDSDQSIYRWRGADITNILSFEKDYPNASVILLEQNYRSTKRILRAANEVIKNNSNRKPKNLWTENDEGIKISYYRGDNEFGEGQFVAGKIHQLHSTGKRKLSDIAILYRTNAQSRVIEETLLKAGLNYNIVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANALDSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKNFEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEERRLAYVGITRAEQELYLTNAKMRTLFGRTNMNPESRFIAEIPDDLLENLNEKKETRATSARKMQPRRGPVSRPVSYASKTGGDTLNWAVGDKAGHKKWGTGTVVSVKGEGEGTELDIAFPSPVGVKRLLAAFAPIEKQ

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_K_5(4C30)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_L_6(4C30)
?
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_D_2(2IS6)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
CHAIN_X_7(4C30)
?
[Raw transfer]
-
CHAIN_Y_8(4C30)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
CHAIN_Y_4(4C2U)
?
[Raw transfer]
-
1 PsiBlast_PDB 86.3269% -88 - C3 -3PJR 8.3 ?
2 PsiBlast_PDB 84.5269% -86 - C3 -1QHG - PCRA_GEOSE -
33 HHSearch 83.9670% -83 - C3 -1PJR - PCRA_GEOSE -
3 PsiBlast_PDB 83.7069% -83 - C3 -1PJR - PCRA_GEOSE -
4 PsiBlast_PDB 79.7872% -92 - C3 -2PJR 12.1 ?
21 PsiBlast_CBE 79.6372% -91 - C3 -2PJR 10.8 ?
26 PsiBlast_CBE 77.8544% -84 - C3 -4C30 5.9 ?
8 PsiBlast_PDB 77.4342% -78 - C3 -2IS6 2.1 UVRD_ECOLI
24 PsiBlast_CBE 76.7344% -83 - C3 -4C30 2.0 ?
6 PsiBlast_PDB 76.6042% -86 - C3 -2IS1 3.2 UVRD_ECOLI
9 PsiBlast_PDB 76.4244% -76 - C3 -4C2U 4.9 ?
37 HHSearch 76.4044% -77 - C3 -4C2U 5.0 ?
7 PsiBlast_PDB 76.3642% -88 - C3 -2IS2 - UVRD_ECOLI -
27 PsiBlast_CBE 76.2044% -77 - C3 -4C2U 4.1 ?
22 PsiBlast_CBE 75.8242% -78 - C3 -4C2T - ? -
5 PsiBlast_PDB 74.6542% -74 - C3 -4C2T 8.0 ?
23 PsiBlast_CBE 74.6342% -86 - C3 -2IS1 6.4 UVRD_ECOLI
34 HHSearch 74.3641% -75 - C3 -4C2T 5.0 ?
10 PsiBlast_PDB 73.5744% -77 - C3 -4C30 Error ?
25 PsiBlast_CBE 72.5444% -69 - C3 -4C30 Error ?
36 HHSearch 71.7641% -86 - C3 -1UAA 9.8 REP_ECOLI
28 PsiBlast_CBE 71.4841% -86 - C3 -1UAA 6.5 REP_ECOLI
11 PsiBlast_PDB 70.6941% -85 - C3 -1UAA 9.9 REP_ECOLI
32 PsiBlast_CBE 25.8474% -98 - C3 -2PJR 4.1 ?
31 PsiBlast_CBE 25.5074% -91 - C3 -2PJR 3.2 ?