@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu07050: (2016-06-11 )
MRRSCLMIRRRKRMFTAVTLLVLLVMGTSVCPVKAEGAARQMEALNRGLVAVKTDGGIFVSWRFLGTENASVLFNVYRDGQKLNAAPVKTTNYVDKNGSAGSTYTVRAVVNGTEQPASEKASVWAQPYHSVPLDKPAGGTTPKGESYTYSANDASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWANGSLYSAKGVKIGSGVPSSTNFGIWWDGDLLREQLDSNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTEHRLYTLMHDPVYRLGIAWQNIAYNQPPHTSFFLGDGMAEQPKPNMYTP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_3(2Z8S)
YESW_BACSU
[Raw transfer]

-

SUGAR_B_4(2Z8S)
YESW_BACSU
[Raw transfer]

-

GOL_A_12(4CAG)
?
[Raw transfer]




MPD_B_(2Z8R)
YESW_BACSU
[Raw transfer]




MPD_A_25(2Z8R)
YESW_BACSU
[Raw transfer]




MPD_A_25(2Z8R)
YESW_BACSU
[Raw transfer]




RAM_A_16(2ZUX)
YESW_BACSU
[Raw transfer]




RAM_A_14(2ZUX)
YESW_BACSU
[Raw transfer]




15 PsiBlast_CBE 85.47100% -21 - C6 -2ZUX - YESW_BACSU -
28 HHSearch 85.19100% -21 * C6 *2ZUX 2.7 YESW_BACSU
17 PsiBlast_CBE 85.19100% -20 - C6 -2Z8R 6.6 YESW_BACSU
3 PsiBlast_PDB 85.04100% -21 - C6 -2ZUX 3.7 YESW_BACSU
18 Fugue 84.83100% -24 - C6 -2Z8R 2.8 YESW_BACSU
1 PsiBlast_PDB 84.83100% -24 - C6 -2Z8R 2.8 YESW_BACSU
16 PsiBlast_CBE 84.72100% -21 - C6 -2Z8S 3.5 YESW_BACSU
2 PsiBlast_PDB 83.34100% -20 - C6 -2Z8S 3.3 YESW_BACSU
4 PsiBlast_PDB 78.9279% -24 - C6 -4CAG 3.8 ?
29 HHSearch 70.7469% -35 - C6 -2ZUY - YESX_BACSU -
5 PsiBlast_PDB 69.8267% -36 - C6 -2ZUY - YESX_BACSU -
11 PsiBlast_PDB 36.2345%-132 - C6 -4A7Z - AUD_PHACH -
9 PsiBlast_PDB 36.1545%-136 - C6 -4A7K - AUD_PHACH -
30 HHSearch 33.2719% -35 - C6 -2ZUX - YESW_BACSU -
10 PsiBlast_PDB 32.5045%-130 - C6 -4A7Y - AUD_PHACH -
7 PsiBlast_PDB 31.1929%-116 - C6 -4TQK - ? -
32 HHSearch 31.1616% -68 - C6 -4TQJ - ? -
6 PsiBlast_PDB 30.6729%-112 - C6 -4TQJ - ? -
22 Fugue 29.6218% -41 - C6 -3ACP - RPN14_YEAST -
8 PsiBlast_PDB 29.5929%-112 - C6 -4TQM - ? -