@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu07560: (2016-06-12 )
MKKVMLATALFLGLTPAGANAADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_A_2(2NZM)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_2(2O0V)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_5(5AMV)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_5(5AMV)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_2(2O17)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_2(2O1D)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_3(3KRG)
PLY_BACSU
[Raw transfer]

-

SUGAR_A_2(2O04)
PLY_BACSU
[Raw transfer]

-

AQA_A_6(3ZSC)
PTLY_THEMA
[Raw transfer]




AQA_A_6(3ZSC)
PTLY_THEMA
[Raw transfer]




AQA_A_6(3ZSC)
PTLY_THEMA
[Raw transfer]




5 PsiBlast_PDB 94.4399% -20 - C6 -2O04 3.1 PLY_BACSU
6 PsiBlast_PDB 94.4199% -22 - C6 -2O0V 4.9 PLY_BACSU
8 PsiBlast_PDB 94.3799% -22 - C6 -2O17 4.8 PLY_BACSU
7 PsiBlast_PDB 94.2599% -23 - C6 -2O0W - PLY_BACSU -
4 PsiBlast_PDB 94.2599% -21 - C6 -2NZM 4.2 PLY_BACSU
10 PsiBlast_PDB 94.1399% -22 - C6 -3KRG 5.5 PLY_BACSU
9 PsiBlast_PDB 94.0699% -22 - C6 -2O1D 4.0 PLY_BACSU
1 PsiBlast_PDB 94.05100% -19 - C6 -1BN8 - PLY_BACSU -
2 PsiBlast_PDB 93.9899% -21 - C6 -2BSP - PLY_BACSU -
34 Fugue 84.3694% -22 - C6 -2BSP - PLY_BACSU -
3 PsiBlast_PDB 82.26100% -22 - C6 -5AMV 3.2 PLY_BACSU
44 HHSearch 82.17100% -22 - C6 -5AMV 3.2 PLY_BACSU
11 PsiBlast_PDB 80.6550% -33 - C6 -1VBL - ? -
45 HHSearch 80.3253% -33 - C6 -1VBL - ? -
12 PsiBlast_PDB 78.5137% -37 - C6 -4HWV - ? -
46 HHSearch 78.3042% -32 - C6 -4HWV - ? -
21 PsiBlast_CBE 77.6337% -32 - C6 -4HWV - ? -
14 PsiBlast_PDB 68.9233% -46 - C6 -1PE9 - PLYA_DICCH -
16 PsiBlast_PDB 68.1732% -49 - C6 -1JTA - PLYA_DICCH -
47 HHSearch 67.9937% -45 - C6 -1PE9 - PLYA_DICCH -
53 HHSearch 60.6331% -58 - C6 -3ZSC 2.1 PTLY_THEMA
35 Fugue 56.8832% -47 - C6 -3ZSC 2.1 PTLY_THEMA
18 PsiBlast_PDB 48.0135% -57 - C6 -3ZSC 2.3 PTLY_THEMA