@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08090: (2016-06-12 )
MTLAIIGGGPAGYAAAVSAAQQGRNVLLIDKGKLGGTCLNEGCIPTKSLLESANVLDKIKHADSFGIELPAGAISVDWSKMQSRKQQVVSQLVQGVQYLMKKNQIQVVKGTASFLSERKLLIEGENGKEIREADQVLIASGSEPIELPFAPFDGEWILDSKDALSLSEIPSSLVIVGGGVIGCEYAGLFARLGSQVTIIETADRLIPAEDEDIARLFQEKLEEDGVEVHTSSRLGRVDQTAKTAIWKSGQREFKTKADYVLVAIGRKPRLDGLQLEQAGVDFSPKGIPVNGHMQTNVPHIYACGDAIGGIQLAHAAFHEGIIAASHASGRDVKINEKHVPRCIYTSPEIACIGMTERQARSIYGDVKIGEFSFSANGKALIKQQAEGKVKIMAEPEFGEIVGVSMIGPDVTELIGQAAAIMNGEMTADMAEHFIAAHPTLSETLHEALLSTIGLAVHA

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_8(2YQU)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_2(4YWO)
?
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




3II_B_6(3II4)
DLDH_MYCTU
[Raw transfer]




ACM_G_7(1GRF)
GSHR_HUMAN
[Raw transfer]




MPD_A_5(2A8X)
DLDH_MYCTU
[Raw transfer]




21 PsiBlast_CBE 91.8040%-114 - C2 -2YQU 12.1 ?
2 PsiBlast_PDB 91.2540%-117 - C2 -2YQU 12.2 ?
22 PsiBlast_CBE 90.4640%-114 - C2 -2EQ7 12.3 ?
130 HHSearch 89.0740%-103 - C2 -2EQ6 12.6 ?
1 PsiBlast_PDB 89.0040%-114 - C2 -2EQ7 12.4 ?
140 HHSearch 88.8636%-116 - C2 -1EBD 11.9 DLDH1_GEOSE
3 PsiBlast_PDB 87.7237%-108 - C2 -1LPF - DLDH_PSEFL -
23 PsiBlast_CBE 87.6037%-109 - C2 -1LPF 11.6 DLDH_PSEFL
28 PsiBlast_CBE 87.4340%-102 - C2 -2EQ9 - ? -
131 HHSearch 87.1436%-107 - C2 -3URH 12.0 ?
36 PsiBlast_CBE 87.1140%-102 - C2 -2EQ6 12.6 ?
112 Fugue 87.0134%-128 - C2 -1EBD - DLDH1_GEOSE -
88 PsiBlast_CBE 86.6433%-124 - C2 -1LVL 11.0 DLDH1_PSEPU
25 PsiBlast_CBE 86.6136%-109 - C2 -3LAD 10.3 DLDH_AZOVI
33 PsiBlast_CBE 86.6040%-102 - C2 -2EQ8 - ? -
27 PsiBlast_CBE 86.5140%-103 - C2 -2EQ9 - ? -
65 PsiBlast_CBE 86.3735%-105 - C2 -1ZMD - DLDH_HUMAN -
29 PsiBlast_CBE 86.2140% -99 - C2 -2EQ9 - ? -
8 PsiBlast_PDB 85.6440%-103 - C2 -2EQ9 - ? -
32 PsiBlast_CBE 85.6040%-100 - C2 -2EQ9 - ? -
129 HHSearch 85.3235%-113 - C2 -3LAD 11.8 DLDH_AZOVI
125 HHSearch 85.1234%-107 * C2 *2QAE 11.8 DLDH_TRYCR
122 HHSearch 84.8132%-125 - C2 -1LVL 11.0 DLDH1_PSEPU
20 PsiBlast_PDB 84.6135%-106 - C2 -3URH 12.0 ?
24 PsiBlast_CBE 84.1637%-108 - C2 -1EBD 11.8 DLDH1_GEOSE
19 PsiBlast_PDB 82.8836% -92 - C2 -1V59 12.7 DLDH_YEAST
134 HHSearch 82.7935% -91 - C2 -1V59 12.7 DLDH_YEAST
10 PsiBlast_PDB 80.9035%-108 - C2 -4JDR 12.1 DLDH_ECOLI
45 PsiBlast_CBE 80.3735%-108 - C2 -4JDR 12.2 DLDH_ECOLI
136 HHSearch 80.1933%-107 - C2 -2A8X 2.8 DLDH_MYCTU
18 PsiBlast_PDB 79.6336% -91 - C2 -1JEH 10.3 DLDH_YEAST
80 PsiBlast_CBE 79.5436% -92 - C2 -1V59 12.5 DLDH_YEAST
81 PsiBlast_CBE 79.0336% -92 - C2 -1JEH 11.2 DLDH_YEAST
89 PsiBlast_CBE 78.7433%-105 - C2 -4YWO 9.3 ?
86 PsiBlast_CBE 78.4933%-106 - C2 -3II4 5.8 DLDH_MYCTU
46 PsiBlast_CBE 77.1936% -99 - C2 -2QAE 10.1 DLDH_TRYCR
12 PsiBlast_PDB 76.4036% -99 - C2 -2QAE 10.2 DLDH_TRYCR
109 PsiBlast_CBE 70.3731% -98 - C2 -1GRF 2.4 GSHR_HUMAN