@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08180: (2016-06-12 )
MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPVGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQVSVEKLTVEAWAEKSFQKLWQALILSKTVPNARVARLILEDLVEANKDFWPELDQSPTRIS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_X_4(1U8X)
GLVA_BACSU
[Raw transfer]




NAD_X_4(1U8X)
GLVA_BACSU
[Raw transfer]




1 PsiBlast_PDB 91.7796% -97 - C5 -1U8X 10.9 GLVA_BACSU
16 HHSearch 90.3296% -95 - C5 -1U8X 10.9 GLVA_BACSU
20 HHSearch 68.0529%-110 - C5 -1S6Y - ? -
4 PsiBlast_PDB 67.3227%-113 - C5 -1UP6 - BGLT_THEMA -
2 PsiBlast_PDB 66.9431%-108 - C5 -1S6Y - ? -
5 PsiBlast_PDB 66.6127%-110 - C5 -1UP4 - BGLT_THEMA -
3 PsiBlast_PDB 65.9227%-107 - C5 -1UP7 - BGLT_THEMA -
18 HHSearch 65.7426%-106 - C5 -1UP7 - BGLT_THEMA -
21 HHSearch 58.4221%-109 - C5 -3U95 - ? -
19 HHSearch 58.0922%-101 - C5 -3FEF - LPLD_BACSU -
26 HHSearch 53.0916%-128 - C5 -4ROR - MDH_METEP -
34 HHSearch 52.9217%-135 - C5 -1A5Z - LDH_THEMA -
31 HHSearch 52.2717%-129 * C5 *4BGV - MDH_PICTO -
33 HHSearch 52.0114%-147 - C5 -4PLZ - LDH_PLAFD -
37 HHSearch 51.3914%-125 - C5 -3VKU - LDH_LACCA -
35 HHSearch 50.8216%-134 - C5 -4ND2 - ? -
24 HHSearch 50.3720%-114 - C5 -1GUZ - MDH_CHLP8 (first) -
25 HHSearch 49.9216%-127 - C5 -3P7M - ? -
6 PsiBlast_PDB 47.9224% -87 - C5 -3FEF - LPLD_BACSU -
30 HHSearch 47.1013%-118 - C5 -3VPG - LDH_THECA -