@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08220: (2016-06-13 )
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVGKTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSSTLNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIKAYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPLNDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGPTGAGKTTVTNLLARFYEPNDGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTANAHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHRLNTIQRADQIVVLKNGEMIEKGSHDELIRQKGFYSDLYESQFEK

Atome Classification :

(58 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4K8O)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ADP_A_2(5DGX)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




ATP_H_8(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




BME_A_2(3NH6)

[Raw transfer]




BME_A_2(3NH6)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




1 PsiBlast_PDB 88.2147%-136 - C2 -3QF4 - Y288_THEMA -
2 PsiBlast_PDB 85.9447%-132 - C2 -4Q4A - Y288_THEMA -
104 HHSearch 85.7448%-133 - C2 -4Q4H - Y288_THEMA -
3 PsiBlast_PDB 84.8847%-130 - C2 -4Q4H - Y288_THEMA -
4 PsiBlast_PDB 83.9547%-130 - C2 -4Q4J - Y288_THEMA -
110 HHSearch 73.7931%-123 - C2 -4Q4H - ? -
34 PsiBlast_CBE 73.1231%-125 - C2 -3QF4 - ? -
21 PsiBlast_CBE 71.6035%-124 - C2 -2ONJ 6.1 Y1866_STAAM
10 PsiBlast_PDB 71.5133% - - C2 -3B5Z - MSBA_SALTY -
26 PsiBlast_CBE 71.5033% - - C2 -3B5Z 2.5 MSBA_SALTY
28 PsiBlast_CBE 71.4933% - - C2 -3B5Z 2.9 MSBA_SALTY
27 PsiBlast_CBE 71.4933% - - C2 -3B5Z 2.3 MSBA_SALTY
7 PsiBlast_PDB 71.4835%-125 - C2 -4A82 - Y1866_STAAM -
31 PsiBlast_CBE 71.4733% - - C2 -3B5Y 1.9 MSBA_SALTY
30 PsiBlast_CBE 71.4733% - - C2 -3B5Y 1.9 MSBA_SALTY
9 PsiBlast_PDB 71.4633% - - C2 -3B5Y - MSBA_SALTY -
29 PsiBlast_CBE 71.4533% - - C2 -3B5Y 1.9 MSBA_SALTY
6 PsiBlast_PDB 71.3635%-124 - C2 -2ONJ 5.2 Y1866_STAAM
108 HHSearch 70.5135%-123 - C2 -4A82 - Y1866_STAAM -
22 PsiBlast_CBE 70.4635%-123 - C2 -2HYD - Y1866_STAAM -
18 PsiBlast_PDB 59.7731%-116 - C2 -4AYX 6.5 ABCBA_HUMAN
17 PsiBlast_PDB 57.1831%-113 - C2 -4AYT 6.0 ABCBA_HUMAN
72 PsiBlast_CBE 54.2941%-140 - C2 -2PMK 6.8
16 PsiBlast_PDB 54.2231%-106 - C2 -4S0F 4.5 ?
35 PsiBlast_CBE 54.1231%-107 - C2 -4S0F 4.1 ?
89 PsiBlast_CBE 53.9040%-135 - C2 -1XEF 5.8 HLYBP_ECOLX
87 PsiBlast_CBE 52.2140%-138 - C2 -1XEF 6.6 HLYBP_ECOLX
78 PsiBlast_CBE 52.0240%-135 - C2 -2FGK 6.6 HLYBP_ECOLX
88 PsiBlast_CBE 51.6240%-133 - C2 -1XEF 6.5 HLYBP_ECOLX
86 PsiBlast_CBE 51.2540%-132 - C2 -1XEF 6.2
79 PsiBlast_CBE 50.9940%-130 - C2 -2FGK 6.5 HLYBP_ECOLX
81 PsiBlast_CBE 50.8640%-137 - C2 -2FGJ 5.8
77 PsiBlast_CBE 50.8540%-129 - C2 -2FGK 4.0 HLYBP_ECOLX
76 PsiBlast_CBE 50.8040%-133 - C2 -2FGK 6.6
119 HHSearch 50.4745%-113 - C2 -3NH6 2.5
82 PsiBlast_CBE 49.9540%-132 - C2 -2FGJ 6.5 HLYBP_ECOLX
83 PsiBlast_CBE 49.8240%-131 - C2 -2FGJ 6.4 HLYBP_ECOLX
84 PsiBlast_CBE 49.6040%-127 - C2 -2FGJ 6.5 HLYBP_ECOLX
54 PsiBlast_CBE 48.9246%-112 - C2 -3NH6 2.5
98 PsiBlast_CBE 47.1037%-123 - C2 -4K8O 6.2
95 PsiBlast_CBE 47.0338%-125 - C2 -2IXE 6.7
97 PsiBlast_CBE 46.9537%-119 - C2 -2IXG 6.6
51 PsiBlast_CBE 46.3746%-118 - C2 -3NHB 6.6
91 PsiBlast_CBE 46.2338%-116 - C2 -2IXF 7.2 TAP1_RAT
52 PsiBlast_CBE 45.9846%-115 - C2 -3NHA 6.4
93 PsiBlast_CBE 45.3638%-121 - C2 -2IXF 6.9 TAP1_RAT
65 PsiBlast_CBE 45.0242%-122 - C2 -5DGX 6.5
92 PsiBlast_CBE 45.0038%-123 - C2 -2IXF 7.1 TAP1_RAT
53 PsiBlast_CBE 44.6046%-107 - C2 -3NH9 6.1
67 PsiBlast_CBE 44.4541%-116 - C2 -1MV5 5.8 LMRA_LACLA
90 PsiBlast_CBE 43.8938%-117 - C2 -2IXF 7.3
73 PsiBlast_CBE 42.0938%-117 - C2 -3VX4 6.0 ?
96 PsiBlast_CBE 41.8538%-114 - C2 -2IXE 6.9 TAP1_RAT
74 PsiBlast_CBE 40.8638%-114 - C2 -3VX4 4.5 ?
69 PsiBlast_CBE 40.5741%-109 - C2 -1MV5 6.3 LMRA_LACLA
68 PsiBlast_CBE 38.7641%-108 - C2 -1MV5 4.2 LMRA_LACLA
94 PsiBlast_CBE 37.5637%-106 - C2 -1JJ7 5.8
66 PsiBlast_CBE 35.5941%-115 - C2 -1MV5 3.2