@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08260: (2016-06-13 )
MSTKKKEAVIGKESLAHKGLLRTITLVSTFGGLLFGYDTGVINGALPFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFGGRLSDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISPAERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLIVPESPRWLAAKGRMGDALRVLRQIREDSQAQQEIKEIKHAIEGTAKKAGFHDFQEPWIRRILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQTEAALIGNIANGVISVIAVIFGIWLLGKVRRRPMLIIGQIGTMTALLLIGILSIVLEGTPALPYVVLSLTILFLAFQQTAISTVTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHIGMSATFFIFVAMNILAILFVKKYVPETKGRSLEQLEHSFRQYGRRADQEIQNQTTHLS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




20 Fugue 87.7534%-139 - C1 -4GC0 4.1 XYLE_ECOLI
3 PsiBlast_PDB 85.9833%-130 - C1 -4GBZ - XYLE_ECOLI -
4 PsiBlast_PDB 85.0033%-128 - C1 -4GC0 4.1 XYLE_ECOLI
2 PsiBlast_PDB 84.8633%-129 - C1 -4GBY 3.2 XYLE_ECOLI
1 PsiBlast_PDB 83.0137%-151 - C1 -4LDS - ? -
8 PsiBlast_PDB 82.3828%-132 - C1 -4ZW9 - GTR3_HUMAN -
9 PsiBlast_PDB 82.2528%-133 - C1 -4ZWB - GTR3_HUMAN -
31 HHSearch 82.1436%-149 - C1 -4LDS - ? -
10 PsiBlast_PDB 80.8728%-140 - C1 -4ZWC - GTR3_HUMAN -
21 Fugue 80.5535%-173 - C1 -4QIQ - XYLE_ECOLI -
34 HHSearch 80.4033%-144 - C1 -4GC0 4.1 XYLE_ECOLI
19 PsiBlast_CBE 80.2633%-143 - C1 -4JA3 - XYLE_ECOLI -
30 HHSearch 79.9128%-160 - C1 -4PYP - GTR1_HUMAN -
18 PsiBlast_CBE 78.3933%-152 - C1 -4JA4 - XYLE_ECOLI -
6 PsiBlast_PDB 78.2427%-155 - C1 -4PYP - GTR1_HUMAN -
17 PsiBlast_CBE 78.2133%-155 - C1 -4JA4 - XYLE_ECOLI -
7 PsiBlast_PDB 77.6528%-134 - C1 -5C65 - GTR3_HUMAN -
5 PsiBlast_PDB 77.2033%-154 - C1 -4JA4 - XYLE_ECOLI -
32 HHSearch 75.6027%-144 - C1 -4ZW9 - GTR3_HUMAN -
33 HHSearch 72.2725%-158 - C1 -4YB9 - GTR5_BOVIN -