@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08310: (2016-06-13 )
MLQAENIKKAYGKKTIVKGISFSLKKGESFGLLGPNGAGKSTTISMISGLVPHDSGNITVGGYVIGKETAKAKQKIGIVPQEIALYPTLTAHENLMFWGKMYGLTHGEAKKRAAEVLEYVGLTERAKDKIETFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLNETGMTVIYTSHYMEEVEFLCDRIGIIDQGEMIAIGTKTDLCSRLGGDTIIQLTVSGINEAFLVAIRSLAHVNDVTVHELELKIDISAAHHEKVVTSLLAEATAHHINLLSLQVQEPNLERLFLNLTGRTLRD

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]




ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




75 HHSearch 89.0747%-123 - C1 -4YER 7.0 ?
1 PsiBlast_PDB 87.3139%-118 - C1 -4YER 7.0 ?
9 PsiBlast_PDB 77.6130%-136 - C1 -4RVC - ? -
2 PsiBlast_PDB 76.2939%-113 - C1 -1VPL - ? -
15 PsiBlast_PDB 74.0831%-125 - C1 -2OUK - ? -
96 Fugue 73.9424%-126 - C1 -3TUZ - METN_ECOLI -
92 HHSearch 73.7830%-135 - C1 -4RVC - ? -
85 HHSearch 72.9630%-129 * C1 *3TUI - METN_ECOLI -
13 PsiBlast_PDB 72.4831%-127 - C1 -2OLJ - ? -
83 HHSearch 71.5731%-123 - C1 -3RLF - MALK_ECOLI -
41 PsiBlast_CBE 70.9931%-127 - C1 -3RLF - MALK_ECOLI -
14 PsiBlast_PDB 70.9731%-122 - C1 -2OLK - ? -
10 PsiBlast_PDB 70.1929%-119 - C1 -4U00 - ? -
51 PsiBlast_CBE 69.9331%-128 - C1 -3PUV - MALK_ECOLI -
32 PsiBlast_CBE 69.8331%-120 - C1 -2OLK - ? -
39 PsiBlast_CBE 69.7031%-124 - C1 -4KI0 - MALK_ECOLI -
22 PsiBlast_CBE 69.6936%-113 - C1 -4P32 6.8 LPTB_ECOLI
25 PsiBlast_CBE 69.6731%-121 - C1 -3C41 - ? -
33 PsiBlast_CBE 69.6131%-119 - C1 -2OLK - ? -
29 PsiBlast_CBE 69.4431%-121 - C1 -2OUK - ? -
4 PsiBlast_PDB 69.2436%-113 - C1 -4P32 6.6 LPTB_ECOLI
23 PsiBlast_CBE 68.4536%-112 - C1 -4P33 7.6 LPTB_ECOLI
5 PsiBlast_PDB 68.3836%-111 - C1 -4P33 7.9 LPTB_ECOLI
3 PsiBlast_PDB 67.2836%-105 - C1 -4QC2 7.4 ?
6 PsiBlast_PDB 66.9635%-109 - C1 -4P31 6.5 LPTB_ECOLI
21 PsiBlast_CBE 65.3136%-107 - C1 -4QC2 7.9 ?
61 PsiBlast_CBE 55.7932%-115 - C1 -1VCI 4.4 ?
69 PsiBlast_CBE 49.6934% -96 - C1 -3TIF 3.1 Y796_METJA