@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08650: (2016-06-13 )
MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSLLV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_C_10(3OID)
FABL_BACSU
[Raw transfer]




NDP_A_6(3OID)
FABL_BACSU
[Raw transfer]




NDP_D_12(3OID)
FABL_BACSU
[Raw transfer]




NDP_B_8(3OID)
FABL_BACSU
[Raw transfer]




PEG_A_6(3OSU)
FABG_STAAM
[Raw transfer]




2 PsiBlast_PDB 89.77100%-100 - C1 -3OID 12.6 FABL_BACSU
21 PsiBlast_CBE 88.97100% -97 - C1 -3OID 12.8 FABL_BACSU
23 PsiBlast_CBE 88.74100% -94 - C1 -3OID 12.5 FABL_BACSU
22 PsiBlast_CBE 88.34100%-101 - C1 -3OID 12.6 FABL_BACSU
24 PsiBlast_CBE 87.85100%-113 - C1 -3OIC - FABL_BACSU -
1 PsiBlast_PDB 87.08100%-125 - C1 -3OIC - FABL_BACSU -
27 PsiBlast_CBE 66.3538% -96 - C1 -4JRO - ? -
100 PsiBlast_CBE 66.3431%-112 - C1 -2ZAT - DHRS4_PIG -
14 PsiBlast_PDB 66.2036%-110 - C1 -2PH3 - ? -
108 HHSearch 64.8733%-105 - C1 -4J2H - ? -
101 PsiBlast_CBE 64.6931%-112 - C1 -2ZAT - DHRS4_PIG -
5 PsiBlast_PDB 64.6938% -98 - C1 -4JRO - ? -
29 PsiBlast_CBE 64.5231%-104 - C1 -1G0O - T4HR_MAGO7 -
75 PsiBlast_CBE 64.3432%-112 - C1 -3O4R - DHRS4_HUMAN -
30 PsiBlast_CBE 64.0731%-105 - C1 -1G0O - T4HR_MAGO7 -
106 HHSearch 63.8927%-106 - C1 -2CFC - HCDR_XANP2 -
35 PsiBlast_CBE 63.4735%-109 - C1 -4ZA2 - ? -
73 PsiBlast_CBE 63.1432%-108 - C1 -3O4R - DHRS4_HUMAN -
18 PsiBlast_PDB 63.0335%-107 - C1 -4ZA2 - ? -
26 PsiBlast_CBE 62.8738% -92 - C1 -4JRO - ? -
7 PsiBlast_PDB 61.2836% -98 - C1 -3OSU 2.4 FABG_STAAM