@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08690: (2016-06-13 )
MGVMKRYMQFVKPYKKQIFVTVLIGIVKFSIPLALPLLLKYVVDDIIQGGGTASDKTTSLFTIMAIMFALFLILRPPVEYYRQYFAQWTASKVLYDIRAKLFDHIQKLSLRFYANTRTGEVISRVINDVEQTKDFVITGLMNIWLDMLTILIVISIMLTLDVKLTLISIVLFPLYGISVKYFYGRLRKLTRERSQALAQVQGHLHERIQGMPVIRSFAIEDHEQAQFNEKNGHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPLTVGTMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKADQIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFYDVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIEAAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDELMDYESQYKHLFTIQNLN

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




21 PsiBlast_CBE 83.3661%-131 - C2 -2ONJ 5.9 Y1866_STAAM
22 PsiBlast_CBE 83.2161%-130 - C2 -2HYD 4.3 Y1866_STAAM
2 PsiBlast_PDB 82.3061%-130 - C2 -2ONJ 6.0 Y1866_STAAM
1 PsiBlast_PDB 82.1261%-129 - C2 -2HYD 4.5 Y1866_STAAM
3 PsiBlast_PDB 80.3361%-131 - C2 -4A82 - Y1866_STAAM -
118 HHSearch 77.5361%-128 - C2 -4A82 - Y1866_STAAM -
33 PsiBlast_CBE 70.3931%-139 - C2 -3QF4 - ? -
119 HHSearch 69.8634%-139 - C2 -4Q4H - Y288_THEMA -
32 PsiBlast_CBE 69.7631%-137 - C2 -4Q4A - ? -
120 HHSearch 67.8830%-134 - C2 -4Q4H - ? -
12 PsiBlast_PDB 64.6432% - - C2 -3B5X - MSBA_VIBCH -
13 PsiBlast_PDB 64.3730%-139 - C2 -4RY2 - ? -
26 PsiBlast_CBE 64.3233% - - C2 -3B5Z 2.5 MSBA_SALTY
10 PsiBlast_PDB 64.3233% - - C2 -3B5Z 2.3 MSBA_SALTY
28 PsiBlast_CBE 64.3133% - - C2 -3B5Z 2.9 MSBA_SALTY
27 PsiBlast_CBE 64.3133% - - C2 -3B5Z 2.3 MSBA_SALTY
30 PsiBlast_CBE 64.2433% - - C2 -3B5Y 1.9 MSBA_SALTY
31 PsiBlast_CBE 64.2333% - - C2 -3B5Y 1.9 MSBA_SALTY
29 PsiBlast_CBE 64.2333% - - C2 -3B5Y 1.9 MSBA_SALTY
9 PsiBlast_PDB 64.2333% - - C2 -3B5Y 2.1 MSBA_SALTY
14 PsiBlast_PDB 52.4730%-110 - C2 -4S0F 4.2 ?
73 PsiBlast_CBE 51.9049%-151 - C2 -1XEF 7.2 HLYBP_ECOLX
60 PsiBlast_CBE 51.7649%-152 - C2 -2PMK 7.1
58 PsiBlast_CBE 50.6149%-149 - C2 -2FF7 6.5
74 PsiBlast_CBE 49.9549%-143 - C2 -1XEF 7.3 HLYBP_ECOLX
65 PsiBlast_CBE 49.9049%-149 - C2 -2FFB 6.3
72 PsiBlast_CBE 49.8249%-142 - C2 -1XEF 7.2
71 PsiBlast_CBE 49.5449%-147 - C2 -2FFA 6.7
61 PsiBlast_CBE 49.2049%-143 - C2 -2FGK 7.3
63 PsiBlast_CBE 48.7949%-146 - C2 -2FGK 7.4 HLYBP_ECOLX
67 PsiBlast_CBE 48.7749%-146 - C2 -2FGJ 7.0
75 PsiBlast_CBE 48.3649%-143 - C2 -1XEF 6.9 HLYBP_ECOLX
66 PsiBlast_CBE 48.2449%-149 - C2 -3B5J 6.9
68 PsiBlast_CBE 47.7449%-143 - C2 -2FGJ 7.1 HLYBP_ECOLX
62 PsiBlast_CBE 47.1349%-140 - C2 -2FGK 6.8 HLYBP_ECOLX
69 PsiBlast_CBE 46.8849%-143 - C2 -2FGJ 7.5 HLYBP_ECOLX
70 PsiBlast_CBE 46.6649%-138 - C2 -2FGJ 7.1 HLYBP_ECOLX
64 PsiBlast_CBE 45.0249%-138 - C2 -2FGK 7.9 HLYBP_ECOLX