@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu09080: (2016-06-14 )
MKTVLELKNVTKNIRGRTIIDDLSFTIREGEVFGFLGPNGAGKTTTIRMMVGLMKLSKGDVLICGQSITKEYAKAIKHIGAIVENPELYKFLSGYKNLQQFARMVKGVTKEKIDEVVELVGLTDRIHDKVKTYSLGMRQRLGLAQCLLHDPKVLILDEPTNGLDPAGIREIRDHLKKLTRERGMAVIVSSHLLSEMELMCDRIAILQKGKLIDIQNVKDENIDENDTYFFQVEQPSEAATVLNQYDLLSKTNGVEIKLAKEEVPAVIELLVMQQIRIYEVKVITKSLEDRFLEMTGETKEEVQHA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]




ATP_B_5(4QC2)
?
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




POP_A_9(2D62)
?
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




1 PsiBlast_PDB 87.0537%-136 - C1 -1VPL - ? -
2 PsiBlast_PDB 81.5028%-116 - C1 -4YER 5.0 ?
25 PsiBlast_CBE 76.8931%-143 - C1 -3TUZ - METN_ECOLI -
6 PsiBlast_PDB 76.7231%-143 - C1 -3TUI - METN_ECOLI -
28 PsiBlast_CBE 76.1431%-143 - C1 -3TUI - METN_ECOLI -
58 Fugue 75.1326%-110 - C1 -1OXS - ? -
26 PsiBlast_CBE 74.6331%-152 - C1 -3TUI - METN_ECOLI -
24 PsiBlast_CBE 74.4431%-148 - C1 -3TUZ - METN_ECOLI -
46 HHSearch 74.3230%-138 * C1 *3TUI - METN_ECOLI -
23 PsiBlast_CBE 74.1831%-150 - C1 -3TUZ - METN_ECOLI -
7 PsiBlast_PDB 74.1431%-150 - C1 -3TUZ - METN_ECOLI -
4 PsiBlast_PDB 73.8931%-152 - C1 -3DHW - METN_ECOLI -
9 PsiBlast_PDB 73.5931%-152 - C1 -3TUJ - METN_ECOLI -
59 Fugue 73.4825%-129 - C1 -3TUZ - METN_ECOLI -
27 PsiBlast_CBE 73.3131%-143 - C1 -3TUI - METN_ECOLI -
29 PsiBlast_CBE 70.8431%-110 - C1 -4P33 7.6 LPTB_ECOLI
44 HHSearch 70.6928%-124 - C1 -3RLF - MALK_ECOLI -
8 PsiBlast_PDB 70.2431%-112 - C1 -4P33 - LPTB_ECOLI -
22 PsiBlast_CBE 69.6431%-118 - C1 -4P32 6.8 LPTB_ECOLI
63 Fugue 69.3523%-111 - C1 -3B60 - MSBA_SALTY -
5 PsiBlast_PDB 68.3731%-115 - C1 -4P32 5.9 LPTB_ECOLI
10 PsiBlast_PDB 68.2131%-112 - C1 -4P31 6.2 LPTB_ECOLI
3 PsiBlast_PDB 67.7231%-109 - C1 -4QC2 6.9 ?
21 PsiBlast_CBE 65.9731%-111 - C1 -4QC2 6.9 ?
12 PsiBlast_PDB 65.4133%-120 - C1 -2D62 3.1 ?
35 HHSearch 50.0030% 18 - C1 -4YER 5.8 ?