@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu09300: (2016-06-14 )
MMNHQFSSLERDRMLTDMTKKTYDLFIIGGGITGAGTALDAASRGMKVALSEMQDFAAGTSSRSTKLVHGGLRYLKQFEVKMVAEVGKERAIVYENGPHVTTPEWMLLPFHKGGTFGSFTTSIGLRVYDFLAGVKKSERRSMLSAKETLQKEPLVKKDGLKGGGYYVEYRTDDARLTIEVMKEAVKFGAEPVNYSKVKELLYEKGKAVGVLIEDVLTKKEYKVYAKKIVNATGPWVDQLREKDHSKNGKHLQHTKGIHLVFDQSVFPLKQAVYFDTPDGRMVFAIPREGKTYVGTTDTVYKEALEHPRMTTEDRDYVIKSINYMFPELNITANDIESSWAGLRPLIHEEGKDPSEISRKDEIWTSDSGLITIAGGKLTGYRKMAEHIVDLVRDRLKEEGEKDFGPCKTKNMPISGGHVGGSKNLMSFVTAKTKEGIAAGLSEKDAKQLAIRYGSNVDRVFDRVEALKDEAAKRNIPVHILAEAEYSIEEEMTATPADFFVRRTGRLFFDINWVRTYKDAVIDFMSERFQWDEQAKNKHTENLNKLLHDAVVPLEQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(3DA1)
?
[Raw transfer]




FAD_A_3(2RGO)
?
[Raw transfer]




FAD_A_2(3DA1)
?
[Raw transfer]




FAD_B_4(2RGO)
?
[Raw transfer]




FAD_A_3(2RGH)
?
[Raw transfer]




FAD_A_3(2RGH)
?
[Raw transfer]




FAD_A_20(2R46)
GLPD_ECOLI
[Raw transfer]




FAD_A_15(2QCU)
GLPD_ECOLI
[Raw transfer]




FAD_A_11(2R4J)
GLPD_ECOLI
[Raw transfer]




FAD_A_15(2QCU)
GLPD_ECOLI
[Raw transfer]




FAD_A_18(2R45)
GLPD_ECOLI
[Raw transfer]




FAD_A_14(2R4E)
GLPD_ECOLI
[Raw transfer]




13P_A_16(2R4E)
GLPD_ECOLI
[Raw transfer]




1 PsiBlast_PDB 74.5358% -64 - C1 -3DA1 9.2 ?
81 HHSearch 72.7559% -65 - C1 -3DA1 9.2 ?
3 PsiBlast_PDB 70.6941% -60 - C1 -2RGO 13.2 ?
82 HHSearch 67.3743% -48 - C1 -2RGH 13.1 ?
21 PsiBlast_CBE 65.5741% -61 - C1 -2RGO 13.8 ?
2 PsiBlast_PDB 62.0543% -46 - C1 -2RGH 11.8 ?
83 HHSearch 55.7531% -57 - C1 -2QCU 12.5 GLPD_ECOLI
4 PsiBlast_PDB 49.9130% -52 - C1 -2R4J 12.0 GLPD_ECOLI
7 PsiBlast_PDB 49.2530% -47 - C1 -2R46 12.9 GLPD_ECOLI
5 PsiBlast_PDB 49.1830% -46 - C1 -2QCU 11.6 GLPD_ECOLI
6 PsiBlast_PDB 49.1430% -50 - C1 -2R45 11.4 GLPD_ECOLI
8 PsiBlast_PDB 49.0930% -48 - C1 -2R4E 11.3 GLPD_ECOLI
51 PsiBlast_CBE 39.8542%-240 - C2 -3ATQ - ? -
52 PsiBlast_CBE 39.8342%-243 - C2 -4OPI - ? -
46 PsiBlast_CBE 39.5742%-243 - C2 -4OPG - ? -
44 PsiBlast_CBE 39.3942%-242 - C2 -4OPT - ? -
85 HHSearch 38.9722% -86 - C1 -1RYI - GLOX_BACSU -
106 Fugue 38.7520% -70 - C1 -5EZ7 - ? -
47 PsiBlast_CBE 38.5942%-249 - C2 -4OPD - ? -
86 HHSearch 38.1519% -88 - C1 -4YSH - ? -