@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu09530: (2016-06-15 )
MEYTSIADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYGKRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFEREMEESVLPYAKDNKITTLLYGSLCRGLLTGKMTEEYTFEGDDLRNHDPKFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWILDQPGADIALWGARKPGQLEALSEITGWTLNSEDQKDINTILENTISDPVGPEFMAPPTREEI

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_4(1LQA)
TAS_ECOLI
[Raw transfer]




NAP_A_3(1PZ1)
GS69_BACSU
[Raw transfer]




NAP_A_3(1PZ1)
GS69_BACSU
[Raw transfer]




NAP_A_2(4WGH)
?
[Raw transfer]




NDP_A_2(5C7H)
?
[Raw transfer]




NAP_A_2(3H7R)
AKRC8_ARATH
[Raw transfer]




GOL_H_8(1MZR)
DKGA_ECOLI
[Raw transfer]




GOL_I_9(1MZR)
DKGA_ECOLI
[Raw transfer]




GOL_A_17(1YNP)
?
[Raw transfer]




FLC_D_8(2BP1)
ARK72_HUMAN
[Raw transfer]




FLC_A_5(2BP1)
ARK72_HUMAN
[Raw transfer]




FLC_C_7(2BP1)
ARK72_HUMAN
[Raw transfer]




FLC_B_6(2BP1)
ARK72_HUMAN
[Raw transfer]




EDO_A_15(3H7R)
AKRC8_ARATH
[Raw transfer]




1 PsiBlast_PDB 94.7797% -97 - C5 -1PZ1 12.1 GS69_BACSU
49 HHSearch 94.2598% -99 - C5 -1PZ1 12.1 GS69_BACSU
50 HHSearch 83.4156%-107 - C5 -3N2T - ? -
2 PsiBlast_PDB 83.0855%-105 - C5 -3N2T - ? -
3 PsiBlast_PDB 74.1837%-105 - C5 -1PYF - IOLS_BACSU -
4 PsiBlast_PDB 73.8637%-105 - C5 -1PZ0 - IOLS_BACSU -
52 HHSearch 72.4136% -98 - C5 -1PYF - IOLS_BACSU -
54 HHSearch 70.8132% -94 - C5 -1LQA - TAS_ECOLI -
55 HHSearch 70.7628%-121 - C5 -1YNP - ? -
57 HHSearch 69.2228%-107 - C5 -3N6Q - GPR_ECOLI -
16 PsiBlast_PDB 68.0728%-104 - C5 -1ZSX - KCAB2_HUMAN -
7 PsiBlast_PDB 67.8429%-116 - C5 -3UYI - PERR_RAUSE -
72 Fugue 67.6526% -95 - C5 -1QRQ - KCAB2_RAT -
59 HHSearch 66.9328%-106 - C5 -3ERP - ? -
71 Fugue 66.8527% -98 - C5 -1QRQ - KCAB2_RAT -
14 PsiBlast_PDB 66.8528%-108 - C5 -3N6Q - GPR_ECOLI -
20 PsiBlast_PDB 66.7629%-101 - C5 -1QRQ - KCAB2_RAT -
64 HHSearch 66.5731%-117 - C5 -4WGH - ? -
18 PsiBlast_PDB 66.2228%-105 - C5 -3EAU - KCAB2_RAT -
19 PsiBlast_PDB 66.0328%-103 - C5 -3EB4 - KCAB2_RAT -
21 PsiBlast_CBE 61.9031% -84 - C5 -1LQA 10.4 TAS_ECOLI
8 PsiBlast_PDB 60.9932%-124 - C5 -4WGH 5.4 ?
25 PsiBlast_CBE 59.6232%-117 - C5 -1YNP 2.6 ?
30 PsiBlast_CBE 56.8631% -99 - C5 -2BP1 3.8 ARK72_HUMAN
32 PsiBlast_CBE 56.3031% -96 - C5 -2BP1 3.7 ARK72_HUMAN
29 PsiBlast_CBE 56.1031% -96 - C5 -2BP1 4.0 ARK72_HUMAN
31 PsiBlast_CBE 55.7431% -94 - C5 -2BP1 2.9 ARK72_HUMAN
38 PsiBlast_CBE 49.7031%-112 - C5 -3H7R 3.0 AKRC8_ARATH
10 PsiBlast_PDB 48.3138% -88 - C5 -5C7H 7.5 ?
40 PsiBlast_CBE 46.5738%-104 - C5 -1MZR 3.2 DKGA_ECOLI