@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu09570: (2016-06-15 )
MKLAGLSREVEENLNKGSWIRKLFDEGARLKKEFGEDQVFDFSLGNPIVEPPEAFKRALIEEAEKGSHGYIQNQGLLAAREKVAQFLGSRFEADFSAERIVMTVGAGGALNVALKSIVNPGEEVIILAPYFAEYKLYIENYGGKAVSCPLTSRFEIDIEAVRQSITPQTKGLILNTPHNPTGTVLSQKNIDDLGALLKEIEEKSGQTIYVLFDEPYSQLIYDEELANPFQSYHRVILASSFSKDLGIAGERLGYIGLDSRMPDADLLINAFVYCNRTLGFVNAPVMMQRAVARMDDLRVDASAYKERRDLMVDILKEAGFEFEMPKGGFFVFPKSPIEDEVAFCVHAAQKYKLLIVPSSGFGMSGHFRLSFSVPIEQIKNSRDIFISLYKDFA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_E_5(1GDE)
?
[Raw transfer]




PMP_A_4(3E2Y)
KAT3_MOUSE
[Raw transfer]




GLU_C_3(1GDE)
?
[Raw transfer]




PLP_A_3(1GD9)
?
[Raw transfer]




PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]




KMT_E_5(1V2E)
?
[Raw transfer]




HCI_E_5(1V2F)
?
[Raw transfer]




ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]




GOL_A_8(3E2Y)
KAT3_MOUSE
[Raw transfer]




EDO_A_11(1VP4)
?
[Raw transfer]




1 PsiBlast_PDB 95.4834%-119 - C1 -3ELE - ? -
34 HHSearch 92.2633%-123 - C1 -3ELE - ? -
32 HHSearch 74.2830%-113 - C1 -1GD9 4.7 ?
9 PsiBlast_PDB 73.5127%-102 - C1 -1B5P 4.0 AAT_THET8
43 HHSearch 73.3825%-115 - C1 -3E2Y 4.2 KAT3_MOUSE
3 PsiBlast_PDB 72.8229%-108 - C1 -1GDE 6.1 ?
37 HHSearch 71.4020%-119 - C1 -4IX8 - ? -
33 HHSearch 70.9228%-109 - C1 -1O4S - AAT_THEMA -
31 HHSearch 70.6727%-103 - C1 -1J32 - ? -
4 PsiBlast_PDB 69.9229%-109 - C1 -1GD9 - ? -
5 PsiBlast_PDB 69.6428% -96 - C1 -1J32 - ? -
7 PsiBlast_PDB 69.1427%-106 - C1 -1XI9 - ? -
2 PsiBlast_PDB 69.0429%-102 - C1 -1O4S - AAT_THEMA -
8 PsiBlast_PDB 68.4027% -97 - C1 -1GCK 2.5 AAT_THET8
47 HHSearch 66.6623%-123 - C1 -4WP0 - KAT1_HUMAN -
50 HHSearch 66.5423%-124 - C1 -4WLH - KAT1_HUMAN -
10 PsiBlast_PDB 66.0026% -98 - C1 -1B5O - AAT_THET8 -
36 HHSearch 65.6121%-117 - C1 -3B46 - BNA3_YEAST -
16 PsiBlast_PDB 65.4526% -99 - C1 -1BJW - AAT_THET8 -
46 HHSearch 65.3726%-120 - C1 -1U08 - YBDL_ECOLI -