@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu09720: (2016-06-15 )
MKIGKTLWRYALLYRKLLITAVLLLTVAVGAELTGPFIGKKMIDDHILGIEKTWYEAAEKDKNAVQFHGVSYVREDRLQEPVSKAKEAHIYQVGMAFYFVDQAVSFDGNRTVSDGKLTITNGDKSRAYAAEKLTKQELFQFYQPEIKGMVLLICLYGGLLVFSVFFQYGQHYLLQMSANRIIQKMRQDVFSHIQKMPIRYFDNLPAGKVVARITNDTEAIRDLYVTVLSTFVTSGIYMFGIFTALFLLDVKLAFVCLAIVPIIWLWSVIYRRYASYYNQKIRSINSDINAKMNESIQGMTIIQAFRHQKETMREFEELNESHFYFQNRMLNLNSLMSHNLVNVIRNLAFVCLIWHFGGASLNAAGIVSIGVLYAFVDYLNRLFQPITGIVNQFSKLELARVSAGRVFELLEEKNTEEAGEPAKERALGRVEFRDVSFAYQEGEEVLKHISFTAQKGETVALVGHTGSGKSSILNLLFRFYDAQKGDVLIDGKSIYNMSRQELRSHMGIVLQDPYLFSGTIGSNVSLDDERMTEEEIKNALRQVGAEPLLKKLPKGINEPVIEKGSTLSSGERQLISFARALAFDPAILILDEATAHIDTETEAVIQKALDVVKQGRTTFVIAHRLSTIRNADQILVLDKGEIVERGNHEELMALEGQYYQMYELQKGQKHSIA

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4K8O)

[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




43 PsiBlast_CBE 98.8833% 0 - C- -4M1M - MDR1A_MOUSE -
42 PsiBlast_CBE 98.8833% 0 - C- -4M1M - MDR1A_MOUSE -
41 PsiBlast_CBE 98.8833% 0 - C- -4M2S - MDR1A_MOUSE -
40 PsiBlast_CBE 98.8833% 0 - C- -4M2S - MDR1A_MOUSE -
39 PsiBlast_CBE 98.8833% 0 - C- -4M2T - MDR1A_MOUSE -
38 PsiBlast_CBE 98.8833% 0 - C- -4M2T - MDR1A_MOUSE -
37 PsiBlast_CBE 96.7733% 0 - C- -3G60 - MDR1A_MOUSE -
36 PsiBlast_CBE 96.7733% 0 - C- -3G61 - MDR1A_MOUSE -
35 PsiBlast_CBE 96.7733% 0 - C- -3G61 - MDR1A_MOUSE -
34 PsiBlast_CBE 96.7733% 0 - C- -3G5U - MDR1A_MOUSE -
33 PsiBlast_CBE 96.7733% 0 - C- -4LSG - MDR1A_MOUSE -
20 PsiBlast_PDB 96.7733% 0 - C- -3G60 - MDR1A_MOUSE -
19 PsiBlast_PDB 96.7733% 0 - C- -3G5U - MDR1A_MOUSE -
18 PsiBlast_PDB 96.7733% 0 - C- -4KSD - MDR1A_MOUSE -
17 PsiBlast_PDB 96.7733% 0 - C- -4KSC - MDR1A_MOUSE -
16 PsiBlast_PDB 96.7733% 0 - C- -4KSB - MDR1A_MOUSE -
15 PsiBlast_PDB 96.7733% 0 - C- -4LSG - MDR1A_MOUSE -
114 HHSearch 85.7633%-144 - C1 -4Q4H - Y288_THEMA -
113 HHSearch 82.8130% - - C1 -3B5X - MSBA_VIBCH -
124 HHSearch 79.4332% 0 - C- -4Q9H - MDR1A_MOUSE -
28 PsiBlast_CBE 73.2631% - - C1 -3B5Z 2.9 MSBA_SALTY
26 PsiBlast_CBE 73.2431% - - C1 -3B5Z 2.5 MSBA_SALTY
10 PsiBlast_PDB 73.2431% - - C1 -3B5Z 2.3 MSBA_SALTY
27 PsiBlast_CBE 73.2331% - - C1 -3B5Z 2.3 MSBA_SALTY
30 PsiBlast_CBE 72.9831% - - C1 -3B5Y 1.9 MSBA_SALTY
29 PsiBlast_CBE 72.9731% - - C1 -3B5Y 1.9 MSBA_SALTY
9 PsiBlast_PDB 72.9731% - - C1 -3B5Y 2.1 MSBA_SALTY
31 PsiBlast_CBE 72.9531% - - C1 -3B5Y 1.9 MSBA_SALTY
44 PsiBlast_CBE 70.5332%-127 - C1 -4AYX 5.0 ABCBA_HUMAN
45 PsiBlast_CBE 67.7832%-123 - C1 -4AYT 5.8 ABCBA_HUMAN
47 PsiBlast_CBE 67.7332%-129 - C1 -4AYW 5.0 ABCBA_HUMAN
14 PsiBlast_PDB 60.8531%-107 - C1 -4S0F 2.4 ?
99 PsiBlast_CBE 50.6036%-130 - C1 -2IXE 6.8
102 PsiBlast_CBE 50.4636%-131 - C1 -4K8O 6.3
95 PsiBlast_CBE 49.1036%-122 - C1 -2IXF 7.2
97 PsiBlast_CBE 47.9836%-126 - C1 -2IXF 7.2 TAP1_RAT
101 PsiBlast_CBE 47.9236%-124 - C1 -2IXG 6.5
98 PsiBlast_CBE 47.9136%-126 - C1 -2IXF 7.1 TAP1_RAT
96 PsiBlast_CBE 47.4136%-121 - C1 -2IXF 7.2 TAP1_RAT
100 PsiBlast_CBE 47.2636%-121 - C1 -2IXE 7.0 TAP1_RAT
88 PsiBlast_CBE 45.6136%-119 - C1 -1JJ7 5.9