@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu09910: (2016-06-15 )
MLTDLTFIHAADLHLDSPFYGISHLPEPIFARIKESTFASVRHMIDAAVREHVDFILLAGDLFDEANRSLKAQLFLKKQFERLRECGISVYVIFGNHDHLGGEWTPIEWPENVHIFSSAVPEEKSFFKEGRRIASIYGFSYQARALMENQAARYRRSTDAPFHIGMLHGTLSGSEGHDPYCPFTHDDLVKSGMDYWALGHIHKRQVLSAEHPAVIYPGNTQARHIKETGDKGYYLVHVTNGDISYEFQRAHDVLWEKAAVDVTEAKNMTALFQMVEDTFSKLRKKGSPVCVRLVLQGTAPEWLLEAPKGTLDEFLEALQEQEAEEERFVWPLRLDDETENEANLTNLDPFFGGLFEDIDRSDLSDVLEGLERHPVYRRHADRFSQEEVKEIKEQAQIILKRQLKVLDT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DA_A_11(1II7)
MRE11_PYRFU
[Raw transfer]
35 HHSearch 84.1025%-123 - C1 -1II7 - MRE11_PYRFU -
38 HHSearch 80.0124%-109 - C1 -4NZV - ? -
25 Fugue 79.2520%-119 - C1 -3AV0 - MRE11_METJA -
39 HHSearch 78.0424%-128 * C1 *3AV0 - MRE11_METJA -
1 PsiBlast_PDB 77.6026%-138 - C1 -3AV0 - MRE11_METJA -
27 Fugue 77.5422%-104 - C1 -1II7 3.4 MRE11_PYRFU
28 Fugue 76.3020% -89 - C1 -3T1I - MRE11_HUMAN -
4 PsiBlast_PDB 75.9326%-133 - C1 -4TUG - MRE11_METJA -
2 PsiBlast_PDB 74.4326%-127 - C1 -5DNY - ? -
5 PsiBlast_PDB 73.9326%-131 - C1 -4TUI - MRE11_METJA -
3 PsiBlast_PDB 73.5026%-127 - C1 -5F3W - ? -
36 HHSearch 73.3224%-112 - C1 -3THO - RAD50_THEMA -
6 PsiBlast_PDB 73.2126%-125 - C1 -3AUZ - MRE11_METJA -
18 PsiBlast_PDB 73.0627%-132 - C1 -3THO - RAD50_THEMA -
8 PsiBlast_PDB 71.9831%-111 - C1 -1II7 - MRE11_PYRFU -
43 HHSearch 71.8822%-120 - C1 -4FBK - NBS1_SCHPO (first) -
13 PsiBlast_PDB 71.7226%-121 - C1 -4NZV - ? -
41 HHSearch 71.6022%-112 - C1 -4FBW - RAD32_SCHPO -
12 PsiBlast_PDB 71.5826%-123 - C1 -4O24 - ? -
14 PsiBlast_PDB 71.4126%-128 - C1 -4O43 - ? -