@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu10110: (2016-06-15 )
MFKIKKKKLFIPIIILVLTAFLALIGYISIIFLGHYVIDEKKLILHASSKIVDQNGDEVASLYTENREPVSINEIPKQVREAFIAVEDKRFYEHHGIDAKSVGRAVYRDILAGGKVEGGSTITQQLAKNIFLTHDKTFLRKTKEVIIAINLERDYSKDKLLEMYLNQLYFGHGVYGIQAASHYYFNKEVKDLTVSEGAVLAAIPKAPSTYSPILHPDKNKERRDTILGMMNDQGYISAKEAVTAQGRTLGLHVKKQSETPWFDSYIDLVIKEAEDKYSISGEQLLQGGYTIKVPLDSKLQKTAYQVMKEGSYYPGTDQNAEGSAVFINNKTGGVEAAIGGRDYTSKGYNRVTAVRQPGSTFKPLAVYGPAMQEKKFKPYSLLKDELQSYGDYTPKNYDSRYEGEVTMSDAITYSKNAPAVWTLNEIGVETGKSYLKANGIDIPDEGLALALGGLEKGVSPLQLAGAFHTFAANGTYTEPFFISSIIDEDGETIADHKEEGKRVFSKQTSWNMTRMLQQVVKKGTATSGTYHGDLAGKTGSTSYTGVSGATKDAWFAGYTPKITGAVWMGYDKTDQNHYLKAGSSYPTRLFKDILTQAGETGHVFTKPKNVKELESPIELKPVKTLTADYTFKAAGLFTIELKWDAQEDDRAVYRIYVNKDGEETLLDSVEGKGSYEIPYANLFSGASYKIVPYNTQTKREGEGTDYVQPKLFSS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AIX_B_3(3ZG8)
?
[Raw transfer]




CB9_B_3(3ZGA)
?
[Raw transfer]




DXF_A_3(3ZG9)
?
[Raw transfer]




DXF_A_3(3ZG9)
?
[Raw transfer]




TLA_B_3(3ZG7)
?
[Raw transfer]




32 HHSearch 78.4733% -39 - C1 -2OLV - ? -
60 Fugue 77.7629% -67 - C1 -3UDI - ? -
6 PsiBlast_PDB 74.1832% -39 - C1 -2OLV - ? -
5 PsiBlast_PDB 74.1332% -40 - C1 -2OLU - ? -
2 PsiBlast_PDB 73.8241% -44 - C1 -3ZGA 3.9 ?
21 PsiBlast_CBE 73.7532% -35 * C1 *3DWK - ? -
22 PsiBlast_CBE 73.7032% -36 - C1 -3DWK - ? -
23 PsiBlast_CBE 73.2432% -37 - C1 -3DWK - ? -
1 PsiBlast_PDB 72.8741% -47 - C1 -3ZG8 3.4 ?
4 PsiBlast_PDB 72.7340% -46 - C1 -3ZG7 3.4 ?
34 HHSearch 72.1040% -49 - C1 -3ZG9 1.5 ?
3 PsiBlast_PDB 72.1041% -47 - C1 -3ZG9 3.6 ?
7 PsiBlast_PDB 69.5430% -70 - C1 -3FWL - PBPB_ECOLI -
56 Fugue 66.6430% -25 - C1 -2OLU - ? -
30 HHSearch 61.6131% -47 - C1 -4OON - PBPA_PSEAE -
16 PsiBlast_PDB 50.0728% -52 - C1 -2Y2J - ? -
18 PsiBlast_PDB 49.1431% -45 - C1 -2C5W - ? -
17 PsiBlast_PDB 48.8628% -51 - C1 -2Y2L - ? -
36 HHSearch 48.7327% -38 - C1 -2Y2M - ? -
28 PsiBlast_CBE 48.6931% -43 - C1 -2ZC5 - ? -