@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu10320: (2016-06-16 )
MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_6(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_D_8(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_C_7(1O8C)
ACUI_ECOLI
[Raw transfer]




NAP_A_3(3NX4)
?
[Raw transfer]




EDO_A_3(4JXK)
?
[Raw transfer]




22 PsiBlast_CBE 75.6698% -88 - C1 -1Y9E - YHFP_BACSU -
1 PsiBlast_PDB 74.8598% -84 - C1 -1TT7 - YHFP_BACSU -
50 HHSearch 74.7199% -81 - C1 -1TT7 - YHFP_BACSU -
21 PsiBlast_CBE 74.6298% -81 - C1 -1Y9E - YHFP_BACSU -
25 PsiBlast_CBE 74.3198% -83 - C1 -1Y9E - YHFP_BACSU -
2 PsiBlast_PDB 73.8798% -83 - C1 -1Y9E - YHFP_BACSU -
24 PsiBlast_CBE 73.4798% -84 - C1 -1Y9E - YHFP_BACSU -
23 PsiBlast_CBE 72.4698% -84 - C1 -1Y9E - YHFP_BACSU -
28 PsiBlast_CBE 66.0147% -98 * C1 *1O8C 11.3 ACUI_ECOLI
4 PsiBlast_PDB 65.0347% -95 - C1 -1O8C - ACUI_ECOLI -
26 PsiBlast_CBE 64.6447% -96 - C1 -1O8C 10.9 ACUI_ECOLI
6 PsiBlast_PDB 64.3545% -99 - C1 -3NX4 - ? -
27 PsiBlast_CBE 64.1347% -95 - C1 -1O8C 11.2 ACUI_ECOLI
5 PsiBlast_PDB 63.7647% -96 - C1 -4JXK - ? -
46 HHSearch 63.5746% -99 - C1 -3NX4 10.7 ?
29 PsiBlast_CBE 62.8847% -96 - C1 -4JXK - ? -
3 PsiBlast_PDB 62.7447% -99 - C1 -1O89 - ACUI_ECOLI -
52 HHSearch 62.5247% -93 - C1 -4JXK 2.3 ?
37 Fugue 62.2547% -98 - C1 -1O89 - ACUI_ECOLI -
12 PsiBlast_PDB 49.5724%-103 - C1 -3PII - ADH3_GEOSE -