@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu13040: (2016-06-20 )
MLDNKTIEIIKSTVPVLQQHGETITGRFYDRMFQDHPELLNIFNQTNQKKKTQRTALANAVIAAAANIDQLGNIIPVVKQIGHKHRSIGIKPEHYPIVGKYLLIAIKDVLGDAATPDIMQAWEKAYGVIADAFIGIEKDMYEQAEEQAGGWKEYKPFVIAKKERESKEITSFYLKPEDSKPLPEFQAGQYISIKVRIPDSEYTHIRQYSLSDMPGKDYYRISVKKDGVVSSYLHDGLQEGDSIEISAPAGDFVLDHASQKDLVLISAGVGITPMISMLKTSVSKQPERQILFIHAAKNSEYHALRHEVEEAAKHSAVKTAFVYREPTEEDRAGDLHFHEGQIDQQFLKELIANTDADYYICGSPSFITAMHKLVSELGSAPESIHYELFGPQLSLAQSV

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_B_5(3TLD)
BAHG_VITST
[Raw transfer]




HEM_B_6(2VHB)
BAHG_VITST
[Raw transfer]




HEM_A_2(3TM9)
BAHG_VITST
[Raw transfer]




HEM_B_4(1VHB)
BAHG_VITST
[Raw transfer]




HEM_B_5(3VHB)
BAHG_VITST
[Raw transfer]




HEM_B_6(4VHB)
BAHG_VITST
[Raw transfer]




FAD_B_12(4EH1)
HMP_VIBCH
[Raw transfer]




HEM_A_2(2WY4)
?
[Raw transfer]




DGG_A_9(3OZV)
HMP_CUPNH
[Raw transfer]




DGG_B_9(1CQX)
HMP_CUPNH
[Raw transfer]




FAD_B_8(3OZW)
HMP_CUPNH
[Raw transfer]




FAD_A_2(1GVH)
HMP_ECOLI
[Raw transfer]




FAD_A_2(1GVH)
HMP_ECOLI
[Raw transfer]




FAD_A_8(3OZV)
HMP_CUPNH
[Raw transfer]




FAD_B_8(1CQX)
HMP_CUPNH
[Raw transfer]




FAD_A_5(1CQX)
HMP_CUPNH
[Raw transfer]




FAD_A_3(4G1V)
?
[Raw transfer]




FAD_A_3(4EH1)
HMP_VIBCH
[Raw transfer]




GOL_B_6(3TLD)
BAHG_VITST
[Raw transfer]




FAD_A_5(1CQX)
HMP_CUPNH
[Raw transfer]




FAD_A_3(4EH1)
HMP_VIBCH
[Raw transfer]




EDO_A_13(3TM9)
BAHG_VITST
[Raw transfer]




EDO_A_11(3TM9)
BAHG_VITST
[Raw transfer]




OXY_A_5(3S1I)
?
[Raw transfer]




FAD_A_5(1CQX)
HMP_CUPNH
[Raw transfer]




2 PsiBlast_PDB 73.9247%-114 - C1 -3OZU - HMP_CUPNH -
45 HHSearch 73.7547%-116 - C1 -4G1V 12.1 ?
21 PsiBlast_CBE 72.5747%-116 - C1 -1CQX 10.7 HMP_CUPNH
23 PsiBlast_CBE 72.5447%-114 - C1 -3OZV 12.3 HMP_CUPNH
4 PsiBlast_PDB 72.2347%-111 - C1 -3OZW - HMP_CUPNH -
6 PsiBlast_PDB 71.9543%-116 - C1 -4G1B - ? -
43 HHSearch 71.7248%-114 - C1 -1CQX 11.4 HMP_CUPNH
22 PsiBlast_CBE 71.6447%-114 - C1 -3OZW 11.9 HMP_CUPNH
1 PsiBlast_PDB 71.4647%-112 - C1 -1CQX - HMP_CUPNH -
24 PsiBlast_CBE 71.4243%-114 - C1 -4G1B - ? -
3 PsiBlast_PDB 71.3547%-113 * C1 *3OZV - HMP_CUPNH -
7 PsiBlast_PDB 70.9243%-112 - C1 -4G1V - ? -
25 PsiBlast_CBE 70.6343%-118 - C1 -4G1B - ? -
26 PsiBlast_CBE 70.5943%-118 - C1 -4G1B - ? -
33 Fugue 65.2440% -97 - C1 -1GVH 10.5 HMP_ECOLI
44 HHSearch 64.3841% -96 - C1 -1GVH 10.5 HMP_ECOLI
5 PsiBlast_PDB 63.8440% -93 - C1 -1GVH - HMP_ECOLI -
14 PsiBlast_PDB 50.8456%-189 - C1 -3TM9 11.5 BAHG_VITST
11 PsiBlast_PDB 50.0556%-222 - C1 -4VHB - BAHG_VITST -
27 PsiBlast_CBE 49.9756%-220 - C1 -4VHB 8.7 BAHG_VITST
31 PsiBlast_CBE 49.2756%-211 - C1 -3TLD 10.9 BAHG_VITST
29 PsiBlast_CBE 48.7756%-222 - C1 -2VHB 10.8 BAHG_VITST
30 PsiBlast_CBE 46.9256%-213 - C1 -1VHB 11.0 BAHG_VITST
28 PsiBlast_CBE 45.5356%-212 - C1 -3VHB 10.0 BAHG_VITST
16 PsiBlast_PDB 39.8647%-185 - C1 -2WY4 11.1 ?
51 HHSearch 38.4437%-121 - C1 -4EH1 10.6 HMP_VIBCH
15 PsiBlast_PDB 36.6535%-116 - C1 -4EH1 9.3 HMP_VIBCH
32 PsiBlast_CBE 35.5335%-110 - C1 -4EH1 11.4 HMP_VIBCH
35 Fugue 32.5141%-158 - C1 -1CQX 3.5 HMP_CUPNH
34 Fugue 24.5148% -98 - C1 -1CQX 8.6 HMP_CUPNH