@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu13550: (2016-06-21 )
MTHSFAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMTGNYEEEIEQLFKGEKVH

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RI2_B_10(3VM6)
R15PI_THEKO
[Raw transfer]



RI2_C_16(3VM6)
R15PI_THEKO
[Raw transfer]
23 PsiBlast_CBE 88.18100% -89 - C6 -2YVK - MTNA_BACSU -
22 PsiBlast_CBE 86.88100% -90 - C6 -2YVK - MTNA_BACSU -
1 PsiBlast_PDB 86.81100% -91 - C6 -2YRF - MTNA_BACSU -
35 HHSearch 86.74100% -90 - C6 -2YVK - MTNA_BACSU -
2 PsiBlast_PDB 86.74100% -90 - C6 -2YVK - MTNA_BACSU -
21 PsiBlast_CBE 86.37100% -88 - C6 -2YVK - MTNA_BACSU -
24 PsiBlast_CBE 85.09100% -88 - C6 -2YRF - MTNA_BACSU -
4 PsiBlast_PDB 73.0442%-103 - C6 -1T5O - MTNA_ARCFU -
36 HHSearch 71.9448% -90 - C6 -1T9K - MTNA_THEMA -
37 HHSearch 71.3743%-101 * C6 *1T5O - MTNA_ARCFU -
3 PsiBlast_PDB 70.7647% -89 - C6 -1T9K - MTNA_THEMA -
38 HHSearch 70.1936% -98 - C6 -4LDR - MTNA_HUMAN -
39 HHSearch 67.8739% -91 - C6 -2A0U - MTNA_LEIMA -
6 PsiBlast_PDB 66.2539% -98 - C6 -4LDR - MTNA_HUMAN -
5 PsiBlast_PDB 65.7639% -95 - C6 -4LDQ - MTNA_HUMAN -
7 PsiBlast_PDB 64.9139% -92 - C6 -2A0U - MTNA_LEIMA -
32 PsiBlast_CBE 61.9432%-113 - C6 -3A11 - R15PI_THEKO -
29 PsiBlast_CBE 61.1832%-115 - C6 -3A11 - R15PI_THEKO -
30 PsiBlast_CBE 61.1032%-111 - C6 -3A11 - R15PI_THEKO -
9 PsiBlast_PDB 61.0332%-113 - C6 -3A11 - R15PI_THEKO -
33 PsiBlast_CBE 60.2332% -99 - C6 -3VM6 4.3 R15PI_THEKO
34 PsiBlast_CBE 60.0532% -99 - C6 -3VM6 4.2 R15PI_THEKO