@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu13700: (2016-06-21 )
MRCQHCHQNEATIRLNMQINSVHKQMVLCETCYNELTRKPSMSMGPQSFGFPFEQAFQPKEQSAAKQSEKKGLLDELAQNITNGAKAGLIDPVIGRDDEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVANTGIRGQFEERMKQLITELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALERRFQPVMVQEPSIEQAILILQGIKDKYEAYHGVTFSDEAIKACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLLIDELNDEDAAERLTAIEAEKTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVEAEHIQEIVEQKTGIPVGKLQADEQTKMKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGAGEKQTKVGFQSDDSVIEEQTLIDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLLDNGEITSFHVILEDDKIKVRAK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(4LJA)

[Raw transfer]




ACP_A_2(4LJ9)

[Raw transfer]




ACP_A_2(4LJ9)

[Raw transfer]




MNT_A_4(4LJ7)
CLPB_THET8
[Raw transfer]




MNT_C_8(4LJ7)

[Raw transfer]




MNT_B_6(4LJ7)
CLPB_THET8
[Raw transfer]




ADP_A_4(4FCV)
CLPB_THET8
[Raw transfer]




ADP_A_2(4LJ5)

[Raw transfer]




ADP_D_6(4FD2)

[Raw transfer]




ADP_A_4(4FCW)
CLPB_THET8
[Raw transfer]




ADP_B_5(4FD2)
CLPB_THET8
[Raw transfer]




ADP_A_4(4FD2)
CLPB_THET8
[Raw transfer]




141 Fugue 94.9146% 0 - C- -1QVR - CLPB_THET8 -
117 HHSearch 83.0650%-124 - C1 -4CIU - CLPB_ECOLI -
4 PsiBlast_PDB 71.5553% -63 - C1 -3J3U - CLPC_BACSU -
118 HHSearch 70.5653% -93 - C1 -3PXI - CLPC_BACSU -
5 PsiBlast_PDB 68.9250% -97 - C1 -3PXI - CLPC_BACSU -
3 PsiBlast_PDB 68.6153% -66 - C1 -3J3R - CLPC_BACSU -
1 PsiBlast_PDB 68.4853% -67 - C1 -3J3S - CLPC_BACSU -
2 PsiBlast_PDB 66.7853% -60 - C1 -3J3T - CLPC_BACSU -
6 PsiBlast_PDB 58.6354%-125 - C1 -4LJ4 - -
22 PsiBlast_CBE 57.9254%-134 - C1 -4LJ7 7.3 CLPB_THET8
21 PsiBlast_CBE 57.8754%-137 - C1 -4LJ7 8.4
10 PsiBlast_PDB 57.8154%-124 - C1 -4LJA 7.1
7 PsiBlast_PDB 57.6454%-125 - C1 -4LJ5 6.5
15 PsiBlast_PDB 57.6353%-135 - C1 -4FCW 7.4 CLPB_THET8
12 PsiBlast_PDB 57.3655%-139 - C1 -4FD2 6.6 CLPB_THET8
24 PsiBlast_CBE 57.1655%-138 - C1 -4FD2 6.2 CLPB_THET8
14 PsiBlast_PDB 56.6153%-128 - C1 -4FCV 6.5 CLPB_THET8
23 PsiBlast_CBE 56.1355%-138 - C1 -4FD2 6.0
11 PsiBlast_PDB 55.8255%-145 - C1 -4FCT - CLPB_THET8 -
9 PsiBlast_PDB 55.3154%-112 - C1 -4LJ9 6.7
8 PsiBlast_PDB 55.2154%-129 - C1 -4LJ7 8.6 CLPB_THET8
122 HHSearch 54.8054%-114 - C1 -4LJ9 6.7