@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu13850: (2016-06-21 )
MNEQVIVQRDPHEPLKTDKREKNWAQHAELIAALVSGALILAGWLLSGYQVLSIILFLLAFVIGGFAKAKEGIEETLESKTLNVELLMIFAAIGSALIGYWAEGAILIFIFSLSGALETYTMNKSSRDLTSLMQLEPEEATLMVNGETKRVPVSDLQAGDMIVIKPGERVAADGIIESGSTSLDESALTGESMPVEKNTGDTVFTGTVNRNGSLTVRVTKANEDSLFRKIIKLVESAQNSVSPAQAFIERFENAYVKGVLIAVALLLFVPHFALGWSWSETFYRAMVFMVVASPCALVASIMPAALSLISNGARNGMLVKGSVFLEQLGSVQMIAFDKTGTVTKGQPAVETIRIAEGFSEAEVLEAVYAIETQSSHPLAQAITAYAESRGVNQSGYISIEETSGFGVMAEVSGAKWKVGKAGFIGEEMAAQFMKQTASDVIQSGHTIVFVKKDDQIAGCIALKDQIRPEAKEVMEELNRLGIKTAMLTGDHEDTAQAIAKEAGMTTVVAECLPDQKVNEIKRLKEEFGTIAMVGDGINDAPALKAADVGIAMGGGTDVALETADMVLMKNDLKKLVNMCRLSRKMNRIIKQNIVFSLAVICLLICANFLQAMELPFGVIGHEGSTILVILNGLRLLK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(2YJ4)
?
[Raw transfer]




ATP_B_4(2YJ5)
?
[Raw transfer]




ACP_B_5(3A1C)
?
[Raw transfer]




ACP_B_5(3A1E)

[Raw transfer]




ACP_A_3(3A1C)
?
[Raw transfer]




ADP_B_5(3A1D)
?
[Raw transfer]




GOL_A_5(2YJ3)
?
[Raw transfer]




GOL_A_2(2YJ3)
?
[Raw transfer]




GOL_A_2(2YJ3)
?
[Raw transfer]




A99_A_3(2YJ6)
?
[Raw transfer]




A99_B_4(2YJ6)
?
[Raw transfer]




A99_A_3(2YJ5)
?
[Raw transfer]




MGF_A_3(4BEV)
?
[Raw transfer]




38 Fugue 91.2137%-103 - C1 -4UMW - ? -
48 HHSearch 90.3439%-102 - C1 -4UMW - ? -
2 PsiBlast_PDB 89.9338%-101 - C1 -4UMW - ? -
1 PsiBlast_PDB 85.8138% -91 - C1 -4UMV - ? -
39 Fugue 82.2929%-102 - C1 -3RFU - ? -
50 HHSearch 82.1532%-101 - C1 -3J09 - COPA_ARCFU -
51 HHSearch 79.4325% -84 - C1 -2ZXE - ? -
49 HHSearch 77.0132% -86 - C1 -3J08 - COPA_ARCFU -
7 PsiBlast_PDB 74.3332% -90 - C1 -4BYG - ? -
4 PsiBlast_PDB 74.2235% -89 - C1 -3J09 - COPA_ARCFU -
6 PsiBlast_PDB 73.6432% -89 - C1 -4BEV 2.4 ?
21 PsiBlast_CBE 73.1332% -86 - C1 -3RFU - ? -
5 PsiBlast_PDB 72.9432% -86 - C1 -3RFU - ? -
23 PsiBlast_CBE 72.7332% -86 - C1 -3RFU - ? -
22 PsiBlast_CBE 72.6332% -86 - C1 -3RFU - ? -
40 Fugue 70.4723% -80 - C1 -3B8E - AT1A1_PIG -
3 PsiBlast_PDB 69.0435% -68 - C1 -3J08 - COPA_ARCFU -
54 HHSearch 66.4624% - - C1 -3IXZ - ATP4A_PIG -
43 Fugue 63.7523% -90 - C1 -1SU4 - AT2A1_RABIT -
57 HHSearch 63.0039%-113 - C1 -3SKX - -
56 HHSearch 62.7739%-100 - C1 -3A1C 5.5 ?
24 PsiBlast_CBE 61.7038% -95 - C1 -3A1D 5.6 ?
26 PsiBlast_CBE 61.5538% -94 - C1 -3A1E 6.5
25 PsiBlast_CBE 60.8738% -96 - C1 -3A1C 7.2 ?
28 PsiBlast_CBE 55.0232%-109 - C1 -2YJ6 6.3 ?
29 PsiBlast_CBE 54.5532%-100 - C1 -2YJ5 6.0 ?
30 PsiBlast_CBE 53.7632% -94 - C1 -2YJ4 6.7 ?
17 PsiBlast_PDB 53.0532% -96 - C1 -2YJ6 6.0 ?
16 PsiBlast_PDB 52.8532% -99 - C1 -2YJ5 6.3 ?
58 HHSearch 52.0233% -98 - C1 -2YJ3 2.9 ?
18 PsiBlast_PDB 51.4232% -97 - C1 -2YJ3 2.9 ?