@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu14330: (2016-06-22 )
MKQAKKQGVLERFYYSSDEIIEKPFNWAQMWRLLSYVKPYRKTILPLSFLTVLIGTAVKLVIPILIGVYVLDQAITGRNSELLIQLIFIISGLYVLNYAANVLRIRWMNQLGQHVIYDLRQHLFTHVQRLSHRFFDQRSAGSILVRIMNDINSLQELFTSGVINLLTDLLLLAGVIIILFTLSPELTIAIMVTLPIMFFISTSLRKKIRRSWQTVRLKQSKLNSHLNESIQGIRVTQAFTQEEENMAYFDGVNQENYESWREATRKNAMFRPLVEMTNAIGTAVLIWYGATLIMNETITIGVFVSFAFYLGMFWEPISRLGQVYNQLLMGMASSERIFEFLDEQPNVKEKPNAIHNEKINGEISFEEVEFSYDEKRKALHAVSFSIPAGSTLALVGHTGSGKTTIANLISRFYDAAGGTIKIDGIPIKDLSLASLRSQISIVLQDTFIFSGTIMENIRFGRPNASDEEVMKASQAVGADEFISDLAEGYATEVEERGSVLSAGQRQLISFARALLADPAIIILDEATASIDTETEVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHGRKIEEGNHDQLLAKGGIYAGLVKAQYSTAIE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]



BME_A_3(3NH9)

[Raw transfer]
2 PsiBlast_PDB 88.9338%-147 - C1 -3QF4 - Y288_THEMA -
1 PsiBlast_PDB 86.5538%-143 - C1 -4Q4J - Y288_THEMA -
4 PsiBlast_PDB 86.5038%-140 - C1 -4Q4H - Y288_THEMA -
3 PsiBlast_PDB 86.1838%-143 - C1 -4Q4A - Y288_THEMA -
106 HHSearch 85.6137%-142 - C1 -4Q4H - Y288_THEMA -
109 HHSearch 80.9830%-136 - C1 -4Q4H - ? -
22 PsiBlast_CBE 78.9236%-127 - C1 -2HYD - Y1866_STAAM -
21 PsiBlast_CBE 78.5736%-128 - C1 -2ONJ - Y1866_STAAM -
108 HHSearch 78.4735%-130 - C1 -4A82 - Y1866_STAAM -
5 PsiBlast_PDB 78.0036%-127 - C1 -2HYD - Y1866_STAAM -
6 PsiBlast_PDB 77.6536%-127 - C1 -2ONJ - Y1866_STAAM -
7 PsiBlast_PDB 77.4336%-128 - C1 -4A82 - Y1866_STAAM -
8 PsiBlast_PDB 77.0432% - - C1 -3B5X - MSBA_VIBCH -
112 HHSearch 75.8530%-131 - C1 -3WMG - ? -
105 HHSearch 75.5031% - - C1 -3B5X - MSBA_VIBCH -
16 PsiBlast_PDB 74.9330% - - C1 -3B5W - MSBA_ECOLI -
13 PsiBlast_PDB 73.7330% - - C1 -3B5Z - MSBA_SALTY -
15 PsiBlast_PDB 73.6932%-125 - C1 -4AYW - ABCBA_HUMAN -
12 PsiBlast_PDB 73.6630% - - C1 -3B5Y - MSBA_SALTY -
103 HHSearch 73.6429%-138 - C1 -4RY2 - ? -
43 PsiBlast_CBE 50.4746%-115 - C1 -3NH9 2.7
64 PsiBlast_CBE 49.5043%-139 - C1 -2FGK 5.8 HLYBP_ECOLX
75 PsiBlast_CBE 49.2443%-136 - C1 -1XEF 4.1 HLYBP_ECOLX
65 PsiBlast_CBE 48.7043%-134 - C1 -2FGK 5.9 HLYBP_ECOLX
74 PsiBlast_CBE 47.9343%-134 - C1 -1XEF 6.7 HLYBP_ECOLX