@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu14530: (2016-06-22 )
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLNIIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGEVLALKGDEASVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMDDFKISAGPDLISRGFVYMRESGDLINDAQELISNHLQKVMERKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIMEV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



C5P_B_9(5A0V)
?
[Raw transfer]



U5P_A_8(4XWT)
?
[Raw transfer]



NACID_E_3(5A0V)
?
[Raw transfer]
-
NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_D_3(4XWW)
?
[Raw transfer]
-
NACID_D_3(4XWW)
?
[Raw transfer]
-
NACID_E_4(4XWW)
?
[Raw transfer]
-
U5P_B_12(4XWT)
?
[Raw transfer]



CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]
-
NACID_F_4(5A0V)
?
[Raw transfer]
-
TLA_A_7(5AHO)
DCR1B_HUMAN
[Raw transfer]



CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]
-
52 HHSearch 84.30100%-119 * C1 *3ZQ4 - RNJ1_BACSU -
1 PsiBlast_PDB 84.08100%-119 - C1 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 83.93100%-122 - C1 -3ZQ4 - RNJ1_BACSU -
22 PsiBlast_CBE 83.36100%-121 - C1 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 82.82100%-120 - C1 -3ZQ4 - RNJ1_BACSU -
54 HHSearch 67.2544%-113 - C1 -3BK2 4.8 RNJ_THET2
5 PsiBlast_PDB 66.1443%-108 - C1 -3BK2 4.8 RNJ_THET2
24 PsiBlast_CBE 66.0139%-113 - C1 -4XWW 8.5 ?
3 PsiBlast_PDB 65.8143%-110 - C1 -3T3O 7.4 RNJ_THET2
6 PsiBlast_PDB 65.3439%-112 - C1 -4XWT 2.3 ?
7 PsiBlast_PDB 65.0839%-107 - C1 -4XWW 7.6 ?
4 PsiBlast_PDB 65.0743%-105 - C1 -3BK1 - RNJ_THET2 -
55 HHSearch 65.0139%-104 - C1 -4XWW 7.6 ?
25 PsiBlast_CBE 65.0139%-110 - C1 -4XWT 3.4 ?
2 PsiBlast_PDB 64.6843%-112 - C1 -3T3N 3.6 RNJ_THET2
27 PsiBlast_CBE 58.8939%-117 - C1 -5A0T 13.4 ?
26 PsiBlast_CBE 58.0439%-113 - C1 -5A0V 9.6 ?
53 HHSearch 57.9639%-112 - C1 -5A0T 13.1 ?
9 PsiBlast_PDB 57.1439%-114 - C1 -5A0V 12.3 ?
8 PsiBlast_PDB 56.7539%-114 - C1 -5A0T 13.1 ?