@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15120: (2016-06-23 )
MQLTELSIKNQNVFVQHYIDGKEEMSSFFDYSIHHKDMWRERLEDLSSRFFAREELAAYLTSYHNKFGSSAMQSAIEKLKDPSSAAVVGGQQAGLLTGPLYTIHKIISIIVLAKQQEKELQVPVIPIFWVAGEDHDLDEINFVHTSEENGPVKKKLPQSYWKKSSAASTSLDQEKCAAWIDDVFAAFEETDHTNTLLDNVKRCLRESVTFTDFFELLIADLFQEEGLVLLNSGDPGIKKLETAMFQKILRENDELARAVSDQQAFMRQAGYKPIIESGKEQANLFYEYEDERFLIEKDNGRFVIKELDLGWTRDELHTHMEEHPERFSNNVVTRPLMQEFLIPTLAFIAGPGEINYWGELKQAFAVMGFKMPPVMPRLNITILERHIEKKLAERNISLQDAIERGTENQRETYFERQIPEEFTAVMDQAKSQIEAIHKTVRQEALKVDQSLEPLLLKNAAFIQDQLQFLERTVMKRIEEKEGYVLKDYERIQNSIKPLLAPQERIWNIMYYLNRYGPKFFTTFKNLPFSFQNQHQVVKL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_A_3(4WBD)
BSHC_BACSU
[Raw transfer]




CIT_A_3(4WBD)
BSHC_BACSU
[Raw transfer]




CIT_A_3(4WBD)
BSHC_BACSU
[Raw transfer]




15 Fugue 87.91100%-109 - C6 -4WBD 4.3 BSHC_BACSU
1 PsiBlast_PDB 87.91100%-109 - C6 -4WBD 4.3 BSHC_BACSU
5 HHSearch 87.3299%-107 - C6 -4WBD 4.3 BSHC_BACSU
22 Fugue 43.6523%-298 * C6 *1SVF - ? -
19 Fugue 37.3125%-140 - C6 -2GTS - ? -
23 Fugue 33.2418% -67 - C4 -2CE7 - FTSH_THEMA -
13 HHSearch 32.2513% -51 - C6 -1NFN - APOE_HUMAN -
16 Fugue 28.9412% -88 - C6 -1PGJ - 6PGD_TRYBB -
17 Fugue 27.2820% -76 - C6 -4MGR - GABR_BACSU -
24 Fugue 26.8313% -66 - C3 -3O6X - ? -
11 HHSearch 23.7110%-189 - C6 -2UVP - ? -
14 HHSearch 22.3611% -75 - C6 -5E62 - ? -
6 HHSearch 21.709% -9 - C6 -1GS9 - APOE_HUMAN -
2 PsiBlast_PDB 21.0136% -56 - C1 -3WA1 - ? -
20 Fugue 20.8131% -22 - C6 -2KIX - ? -
7 HHSearch 20.6925%-139 - C2 -1KCN - ? -
18 Fugue 18.9718% -64 - C5 -4MSX - SAD1_YEAST -
8 HHSearch 17.9217% 144 - C6 -3R2P - APOA1_HUMAN -
3 PsiBlast_PDB 13.9532% -19 - C6 -4XRP - ? -
9 HHSearch 13.7416% 171 - C6 -3R2P - APOA1_HUMAN -